Strain Fitness in Pseudomonas simiae WCS417 around PS417_11020

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11015 and PS417_11020 are separated by 36 nucleotidesPS417_11020 and PS417_11025 are separated by 37 nucleotides PS417_11015: PS417_11015 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data), at 2,360,549 to 2,362,129 _11015 PS417_11020: PS417_11020 - L-arabinolactonase (EC 3.1.1.15) (from data), at 2,362,166 to 2,363,029 _11020 PS417_11025: PS417_11025 - sugar ABC transporter substrate-binding protein, at 2,363,067 to 2,364,071 _11025 Position (kb) 2362 2363 2364Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2361.681 kb on + strand, within PS417_11015at 2361.681 kb on + strand, within PS417_11015at 2361.682 kb on - strand, within PS417_11015at 2361.682 kb on - strand, within PS417_11015at 2361.682 kb on - strand, within PS417_11015at 2362.043 kb on - strandat 2362.174 kb on + strandat 2362.569 kb on + strand, within PS417_11020at 2362.791 kb on - strand, within PS417_11020at 2362.791 kb on - strand, within PS417_11020at 2363.041 kb on + strandat 2363.466 kb on + strand, within PS417_11025at 2363.559 kb on + strand, within PS417_11025at 2363.559 kb on + strand, within PS417_11025at 2363.560 kb on - strand, within PS417_11025at 2363.560 kb on - strand, within PS417_11025at 2363.560 kb on - strand, within PS417_11025at 2363.560 kb on - strand, within PS417_11025at 2363.934 kb on + strand, within PS417_11025at 2363.935 kb on - strand, within PS417_11025at 2363.937 kb on - strand, within PS417_11025at 2363.955 kb on + strand, within PS417_11025at 2363.955 kb on + strand, within PS417_11025at 2363.956 kb on - strand, within PS417_11025at 2363.956 kb on - strand, within PS417_11025

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,361,681 + PS417_11015 0.72 -2.6
2,361,681 + PS417_11015 0.72 -0.6
2,361,682 - PS417_11015 0.72 -0.2
2,361,682 - PS417_11015 0.72 -0.1
2,361,682 - PS417_11015 0.72 -0.9
2,362,043 - +0.9
2,362,174 + +0.0
2,362,569 + PS417_11020 0.47 +3.4
2,362,791 - PS417_11020 0.72 +0.4
2,362,791 - PS417_11020 0.72 -0.1
2,363,041 + -0.4
2,363,466 + PS417_11025 0.40 -1.8
2,363,559 + PS417_11025 0.49 -0.1
2,363,559 + PS417_11025 0.49 +0.1
2,363,560 - PS417_11025 0.49 -1.0
2,363,560 - PS417_11025 0.49 +0.3
2,363,560 - PS417_11025 0.49 -1.0
2,363,560 - PS417_11025 0.49 -0.9
2,363,934 + PS417_11025 0.86 +1.0
2,363,935 - PS417_11025 0.86 -0.9
2,363,937 - PS417_11025 0.87 -0.6
2,363,955 + PS417_11025 0.88 +0.0
2,363,955 + PS417_11025 0.88 -1.4
2,363,956 - PS417_11025 0.88 -0.9
2,363,956 - PS417_11025 0.88 -0.3

Or see this region's nucleotide sequence