Strain Fitness in Pseudomonas putida KT2440 around PP_5575

Experiment: Growth at 34C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3106 and PP_5575 are separated by 10 nucleotidesPP_5575 and PP_3107 overlap by 20 nucleotidesPP_3107 and PP_3108 are separated by 6 nucleotides PP_3106: PP_3106 - conserved protein of unknown function, at 3,508,373 to 3,510,229 _3106 PP_5575: PP_5575 - conserved protein of unknown function, at 3,510,240 to 3,510,824 _5575 PP_3107: PP_3107 - conserved protein of unknown function, at 3,510,805 to 3,511,326 _3107 PP_3108: PP_3108 - Rhs-related protein, at 3,511,333 to 3,515,490 _3108 Position (kb) 3510 3511Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3509.242 kb on + strand, within PP_3106at 3509.312 kb on + strand, within PP_3106at 3509.336 kb on + strand, within PP_3106at 3509.369 kb on - strand, within PP_3106at 3509.411 kb on + strand, within PP_3106at 3509.411 kb on + strand, within PP_3106at 3509.411 kb on + strand, within PP_3106at 3509.411 kb on + strand, within PP_3106at 3509.412 kb on - strand, within PP_3106at 3509.412 kb on - strand, within PP_3106at 3509.412 kb on - strand, within PP_3106at 3509.412 kb on - strand, within PP_3106at 3509.640 kb on + strand, within PP_3106at 3509.641 kb on - strand, within PP_3106at 3509.765 kb on + strand, within PP_3106at 3509.765 kb on + strand, within PP_3106at 3509.765 kb on + strand, within PP_3106at 3509.766 kb on - strand, within PP_3106at 3509.766 kb on - strand, within PP_3106at 3509.981 kb on - strand, within PP_3106at 3509.981 kb on - strand, within PP_3106at 3509.992 kb on + strand, within PP_3106at 3509.992 kb on + strand, within PP_3106at 3509.993 kb on - strand, within PP_3106at 3509.993 kb on - strand, within PP_3106at 3510.047 kb on + strandat 3510.047 kb on + strandat 3510.047 kb on + strandat 3510.047 kb on + strandat 3510.047 kb on + strandat 3510.048 kb on - strandat 3510.243 kb on + strandat 3510.243 kb on + strandat 3510.244 kb on - strandat 3510.244 kb on - strandat 3510.244 kb on - strandat 3510.244 kb on - strandat 3510.244 kb on - strandat 3510.244 kb on - strandat 3510.244 kb on - strandat 3510.259 kb on - strandat 3510.511 kb on + strand, within PP_5575at 3510.512 kb on - strand, within PP_5575at 3510.872 kb on + strand, within PP_3107at 3511.012 kb on + strand, within PP_3107at 3511.012 kb on + strand, within PP_3107at 3511.013 kb on - strand, within PP_3107at 3511.013 kb on - strand, within PP_3107at 3511.013 kb on - strand, within PP_3107at 3511.130 kb on - strand, within PP_3107at 3511.130 kb on - strand, within PP_3107at 3511.130 kb on - strand, within PP_3107at 3511.130 kb on - strand, within PP_3107at 3511.133 kb on - strand, within PP_3107at 3511.133 kb on - strand, within PP_3107at 3511.133 kb on - strand, within PP_3107at 3511.364 kb on + strandat 3511.364 kb on + strandat 3511.533 kb on - strandat 3511.539 kb on + strandat 3511.539 kb on + strandat 3511.540 kb on - strandat 3511.540 kb on - strandat 3511.540 kb on - strandat 3511.540 kb on - strandat 3511.566 kb on - strandat 3511.786 kb on + strand, within PP_3108at 3511.786 kb on + strand, within PP_3108at 3511.787 kb on - strand, within PP_3108

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
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3,509,242 + PP_3106 0.47 +0.8
3,509,312 + PP_3106 0.51 -0.4
3,509,336 + PP_3106 0.52 +0.1
3,509,369 - PP_3106 0.54 +0.6
3,509,411 + PP_3106 0.56 -1.7
3,509,411 + PP_3106 0.56 +0.8
3,509,411 + PP_3106 0.56 -0.2
3,509,411 + PP_3106 0.56 -0.3
3,509,412 - PP_3106 0.56 +0.2
3,509,412 - PP_3106 0.56 -0.4
3,509,412 - PP_3106 0.56 -0.5
3,509,412 - PP_3106 0.56 -0.6
3,509,640 + PP_3106 0.68 +0.3
3,509,641 - PP_3106 0.68 -0.5
3,509,765 + PP_3106 0.75 +0.6
3,509,765 + PP_3106 0.75 -1.2
3,509,765 + PP_3106 0.75 -2.8
3,509,766 - PP_3106 0.75 -2.8
3,509,766 - PP_3106 0.75 -0.0
3,509,981 - PP_3106 0.87 +0.7
3,509,981 - PP_3106 0.87 -0.4
3,509,992 + PP_3106 0.87 -1.5
3,509,992 + PP_3106 0.87 -2.4
3,509,993 - PP_3106 0.87 -0.0
3,509,993 - PP_3106 0.87 +1.3
3,510,047 + +1.0
3,510,047 + -0.4
3,510,047 + -2.8
3,510,047 + +0.6
3,510,047 + +1.1
3,510,048 - +0.5
3,510,243 + +0.2
3,510,243 + +0.4
3,510,244 - +0.1
3,510,244 - -0.1
3,510,244 - +0.0
3,510,244 - -0.1
3,510,244 - -0.6
3,510,244 - -0.7
3,510,244 - -0.2
3,510,259 - +0.1
3,510,511 + PP_5575 0.46 +1.3
3,510,512 - PP_5575 0.46 -0.2
3,510,872 + PP_3107 0.13 -0.2
3,511,012 + PP_3107 0.40 -0.5
3,511,012 + PP_3107 0.40 -0.2
3,511,013 - PP_3107 0.40 +0.7
3,511,013 - PP_3107 0.40 +1.1
3,511,013 - PP_3107 0.40 +1.2
3,511,130 - PP_3107 0.62 -0.9
3,511,130 - PP_3107 0.62 -1.4
3,511,130 - PP_3107 0.62 +0.2
3,511,130 - PP_3107 0.62 -0.3
3,511,133 - PP_3107 0.63 -0.2
3,511,133 - PP_3107 0.63 -0.3
3,511,133 - PP_3107 0.63 -0.0
3,511,364 + -0.0
3,511,364 + -0.9
3,511,533 - +1.2
3,511,539 + +0.3
3,511,539 + +1.4
3,511,540 - -0.3
3,511,540 - -1.7
3,511,540 - -0.3
3,511,540 - +0.4
3,511,566 - +2.0
3,511,786 + PP_3108 0.11 +0.6
3,511,786 + PP_3108 0.11 +0.4
3,511,787 - PP_3108 0.11 -0.5

Or see this region's nucleotide sequence