Strain Fitness in Pseudomonas putida KT2440 around PP_5472

Experiment: Growth at 34C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1535 and PP_1536 are separated by 14 nucleotidesPP_1536 and PP_1537 overlap by 4 nucleotidesPP_1537 and PP_5472 overlap by 4 nucleotidesPP_5472 and PP_1538 overlap by 4 nucleotidesPP_1538 and PP_1539 are separated by 83 nucleotides PP_1535: PP_1535 - putative Methyltransferase, at 1,739,823 to 1,740,287 _1535 PP_1536: PP_1536 - conserved protein of unknown function, at 1,740,302 to 1,740,685 _1536 PP_1537: PP_1537 - conserved protein of unknown function, at 1,740,682 to 1,740,909 _1537 PP_5472: PP_5472 - conserved exported protein of unknown function, at 1,740,906 to 1,741,163 _5472 PP_1538: PP_1538 - conserved protein of unknown function, at 1,741,160 to 1,741,912 _1538 PP_1539: PP_1539 - conserved protein of unknown function, at 1,741,996 to 1,742,862 _1539 Position (kb) 1740 1741 1742Strain fitness (log2 ratio) -2 -1 0 1 2at 1739.931 kb on + strand, within PP_1535at 1739.931 kb on + strand, within PP_1535at 1739.931 kb on + strand, within PP_1535at 1739.932 kb on - strand, within PP_1535at 1739.932 kb on - strand, within PP_1535at 1739.932 kb on - strand, within PP_1535at 1740.046 kb on + strand, within PP_1535at 1740.447 kb on + strand, within PP_1536at 1740.476 kb on + strand, within PP_1536at 1740.517 kb on - strand, within PP_1536at 1740.600 kb on - strand, within PP_1536at 1740.665 kb on + strandat 1740.734 kb on + strand, within PP_1537at 1740.734 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.800 kb on - strand, within PP_1537at 1740.800 kb on - strand, within PP_1537at 1740.801 kb on + strand, within PP_1537at 1740.802 kb on - strand, within PP_1537at 1740.840 kb on + strand, within PP_1537at 1740.849 kb on + strand, within PP_1537at 1740.873 kb on - strand, within PP_1537at 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.917 kb on - strandat 1740.917 kb on - strandat 1740.917 kb on - strandat 1740.917 kb on - strandat 1740.957 kb on - strand, within PP_5472at 1740.957 kb on - strand, within PP_5472at 1741.050 kb on + strand, within PP_5472at 1741.050 kb on + strand, within PP_5472at 1741.050 kb on + strand, within PP_5472at 1741.051 kb on - strand, within PP_5472at 1741.051 kb on - strand, within PP_5472at 1741.051 kb on - strand, within PP_5472at 1741.054 kb on + strand, within PP_5472at 1741.054 kb on + strand, within PP_5472at 1741.055 kb on - strand, within PP_5472at 1741.055 kb on - strand, within PP_5472at 1741.063 kb on - strand, within PP_5472at 1741.308 kb on + strand, within PP_1538at 1741.308 kb on + strand, within PP_1538at 1741.309 kb on - strand, within PP_1538at 1741.309 kb on - strand, within PP_1538at 1741.309 kb on - strand, within PP_1538at 1741.309 kb on - strand, within PP_1538at 1741.311 kb on + strand, within PP_1538at 1741.311 kb on + strand, within PP_1538at 1741.312 kb on - strand, within PP_1538at 1741.312 kb on - strand, within PP_1538at 1741.343 kb on + strand, within PP_1538at 1741.540 kb on - strand, within PP_1538at 1741.560 kb on + strand, within PP_1538at 1741.561 kb on - strand, within PP_1538at 1741.624 kb on + strand, within PP_1538at 1741.701 kb on + strand, within PP_1538at 1741.760 kb on + strand, within PP_1538at 1741.760 kb on + strand, within PP_1538at 1741.760 kb on + strand, within PP_1538at 1741.761 kb on - strand, within PP_1538at 1741.761 kb on - strand, within PP_1538at 1741.761 kb on - strand, within PP_1538at 1741.761 kb on - strand, within PP_1538at 1741.761 kb on - strand, within PP_1538at 1741.761 kb on - strand, within PP_1538at 1741.912 kb on + strandat 1741.912 kb on + strandat 1741.912 kb on + strandat 1741.912 kb on + strandat 1741.913 kb on - strandat 1741.913 kb on - strandat 1741.947 kb on + strandat 1741.947 kb on + strandat 1741.947 kb on + strandat 1741.947 kb on + strandat 1741.948 kb on - strandat 1742.050 kb on + strandat 1742.050 kb on + strandat 1742.050 kb on + strandat 1742.051 kb on - strandat 1742.091 kb on + strand, within PP_1539at 1742.092 kb on - strand, within PP_1539at 1742.092 kb on - strand, within PP_1539at 1742.092 kb on - strand, within PP_1539at 1742.092 kb on - strand, within PP_1539

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
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1,739,931 + PP_1535 0.23 +0.1
1,739,931 + PP_1535 0.23 +0.1
1,739,931 + PP_1535 0.23 -0.7
1,739,932 - PP_1535 0.23 -1.4
1,739,932 - PP_1535 0.23 +0.4
1,739,932 - PP_1535 0.23 +1.3
1,740,046 + PP_1535 0.48 -0.1
1,740,447 + PP_1536 0.38 +0.1
1,740,476 + PP_1536 0.45 -0.4
1,740,517 - PP_1536 0.56 -0.6
1,740,600 - PP_1536 0.78 -0.5
1,740,665 + -0.2
1,740,734 + PP_1537 0.23 -0.0
1,740,734 + PP_1537 0.23 +1.1
1,740,799 + PP_1537 0.51 -0.4
1,740,799 + PP_1537 0.51 +1.3
1,740,799 + PP_1537 0.51 +0.1
1,740,799 + PP_1537 0.51 -0.6
1,740,799 + PP_1537 0.51 +0.4
1,740,800 - PP_1537 0.52 +0.2
1,740,800 - PP_1537 0.52 -0.2
1,740,801 + PP_1537 0.52 +1.3
1,740,802 - PP_1537 0.53 -0.8
1,740,840 + PP_1537 0.69 +0.1
1,740,849 + PP_1537 0.73 +1.4
1,740,873 - PP_1537 0.84 +0.8
1,740,916 + +0.2
1,740,916 + +0.2
1,740,916 + +1.0
1,740,916 + +0.7
1,740,916 + +0.7
1,740,916 + -0.7
1,740,917 - -0.8
1,740,917 - -2.6
1,740,917 - +0.8
1,740,917 - +0.3
1,740,957 - PP_5472 0.20 -0.4
1,740,957 - PP_5472 0.20 -1.0
1,741,050 + PP_5472 0.56 +1.1
1,741,050 + PP_5472 0.56 +0.9
1,741,050 + PP_5472 0.56 -0.0
1,741,051 - PP_5472 0.56 +1.0
1,741,051 - PP_5472 0.56 +1.6
1,741,051 - PP_5472 0.56 +2.2
1,741,054 + PP_5472 0.57 +0.1
1,741,054 + PP_5472 0.57 -0.4
1,741,055 - PP_5472 0.58 +0.8
1,741,055 - PP_5472 0.58 -1.4
1,741,063 - PP_5472 0.61 +1.0
1,741,308 + PP_1538 0.20 +0.6
1,741,308 + PP_1538 0.20 +0.4
1,741,309 - PP_1538 0.20 +0.4
1,741,309 - PP_1538 0.20 -0.1
1,741,309 - PP_1538 0.20 +0.1
1,741,309 - PP_1538 0.20 +0.3
1,741,311 + PP_1538 0.20 +1.0
1,741,311 + PP_1538 0.20 -1.1
1,741,312 - PP_1538 0.20 -0.8
1,741,312 - PP_1538 0.20 -0.2
1,741,343 + PP_1538 0.24 -0.9
1,741,540 - PP_1538 0.50 +0.4
1,741,560 + PP_1538 0.53 +0.5
1,741,561 - PP_1538 0.53 +0.1
1,741,624 + PP_1538 0.62 -0.8
1,741,701 + PP_1538 0.72 +1.4
1,741,760 + PP_1538 0.80 +0.4
1,741,760 + PP_1538 0.80 +0.2
1,741,760 + PP_1538 0.80 +0.5
1,741,761 - PP_1538 0.80 -0.3
1,741,761 - PP_1538 0.80 -1.7
1,741,761 - PP_1538 0.80 +0.3
1,741,761 - PP_1538 0.80 -0.3
1,741,761 - PP_1538 0.80 +0.1
1,741,761 - PP_1538 0.80 +1.1
1,741,912 + -0.0
1,741,912 + +1.0
1,741,912 + -0.2
1,741,912 + -1.4
1,741,913 - +0.1
1,741,913 - -0.8
1,741,947 + +0.2
1,741,947 + -0.0
1,741,947 + +0.1
1,741,947 + +0.3
1,741,948 - -1.5
1,742,050 + -0.8
1,742,050 + +0.3
1,742,050 + -1.3
1,742,051 - +0.9
1,742,091 + PP_1539 0.11 -0.7
1,742,092 - PP_1539 0.11 -1.5
1,742,092 - PP_1539 0.11 -1.2
1,742,092 - PP_1539 0.11 -1.0
1,742,092 - PP_1539 0.11 -0.6

Or see this region's nucleotide sequence