Strain Fitness in Pseudomonas putida KT2440 around PP_5152

Experiment: Growth at 34C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5151 and PP_5152 are separated by 90 nucleotidesPP_5152 and PP_5153 are separated by 182 nucleotidesPP_5153 and PP_5154 are separated by 26 nucleotides PP_5151: PP_5151 - conserved exported protein of unknown function, at 5,877,083 to 5,877,985 _5151 PP_5152: PP_5152 - conserved exported protein of unknown function, at 5,878,076 to 5,878,996 _5152 PP_5153: PP_5153 - putative isomerase/hydrolase, at 5,879,179 to 5,879,844 _5153 PP_5154: PP_5154 - putative Oxidoreductase, FAD-binding, at 5,879,871 to 5,881,238 _5154 Position (kb) 5878 5879Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5877.108 kb on + strandat 5877.108 kb on + strandat 5877.108 kb on + strandat 5877.108 kb on + strandat 5877.109 kb on - strandat 5877.109 kb on - strandat 5877.109 kb on - strandat 5877.135 kb on + strandat 5877.135 kb on + strandat 5877.136 kb on - strandat 5877.224 kb on - strand, within PP_5151at 5877.242 kb on + strand, within PP_5151at 5877.243 kb on - strand, within PP_5151at 5877.382 kb on - strand, within PP_5151at 5877.423 kb on + strand, within PP_5151at 5877.423 kb on + strand, within PP_5151at 5877.424 kb on - strand, within PP_5151at 5877.424 kb on - strand, within PP_5151at 5877.424 kb on - strand, within PP_5151at 5877.424 kb on - strand, within PP_5151at 5877.424 kb on - strand, within PP_5151at 5877.424 kb on - strand, within PP_5151at 5877.582 kb on - strand, within PP_5151at 5877.621 kb on + strand, within PP_5151at 5877.621 kb on + strand, within PP_5151at 5877.621 kb on + strand, within PP_5151at 5877.621 kb on + strand, within PP_5151at 5877.621 kb on + strand, within PP_5151at 5877.621 kb on + strand, within PP_5151at 5877.622 kb on - strand, within PP_5151at 5877.622 kb on - strand, within PP_5151at 5877.622 kb on - strand, within PP_5151at 5877.622 kb on - strand, within PP_5151at 5877.622 kb on - strand, within PP_5151at 5877.622 kb on - strand, within PP_5151at 5877.622 kb on - strand, within PP_5151at 5877.639 kb on + strand, within PP_5151at 5877.639 kb on + strand, within PP_5151at 5877.640 kb on - strand, within PP_5151at 5878.017 kb on + strandat 5878.018 kb on - strandat 5878.018 kb on - strandat 5878.043 kb on + strandat 5878.044 kb on - strandat 5878.122 kb on + strandat 5878.122 kb on + strandat 5878.122 kb on + strandat 5878.123 kb on - strandat 5878.393 kb on - strand, within PP_5152at 5878.393 kb on - strand, within PP_5152at 5878.497 kb on + strand, within PP_5152at 5878.498 kb on - strand, within PP_5152at 5878.655 kb on + strand, within PP_5152at 5878.656 kb on - strand, within PP_5152at 5878.656 kb on - strand, within PP_5152at 5878.800 kb on + strand, within PP_5152at 5878.801 kb on - strand, within PP_5152at 5878.814 kb on + strand, within PP_5152at 5878.814 kb on + strand, within PP_5152at 5878.815 kb on - strand, within PP_5152at 5878.950 kb on + strandat 5878.951 kb on - strandat 5878.951 kb on - strandat 5878.951 kb on - strandat 5879.021 kb on + strandat 5879.021 kb on + strandat 5879.103 kb on - strandat 5879.112 kb on + strandat 5879.112 kb on + strandat 5879.113 kb on - strandat 5879.138 kb on - strandat 5879.138 kb on - strandat 5879.358 kb on + strand, within PP_5153at 5879.358 kb on + strand, within PP_5153at 5879.359 kb on - strand, within PP_5153at 5879.359 kb on - strand, within PP_5153at 5879.359 kb on - strand, within PP_5153at 5879.362 kb on - strand, within PP_5153at 5879.362 kb on - strand, within PP_5153at 5879.362 kb on - strand, within PP_5153at 5879.362 kb on - strand, within PP_5153at 5879.374 kb on + strand, within PP_5153at 5879.636 kb on + strand, within PP_5153at 5879.637 kb on - strand, within PP_5153at 5879.765 kb on + strand, within PP_5153at 5879.765 kb on + strand, within PP_5153at 5879.765 kb on + strand, within PP_5153at 5879.766 kb on - strandat 5879.766 kb on - strand, within PP_5153at 5879.821 kb on + strandat 5879.821 kb on + strandat 5879.821 kb on + strandat 5879.821 kb on + strandat 5879.822 kb on - strandat 5879.825 kb on + strandat 5879.825 kb on + strandat 5879.826 kb on - strandat 5879.826 kb on - strandat 5879.838 kb on - strandat 5879.912 kb on + strandat 5879.931 kb on + strandat 5879.931 kb on + strandat 5879.931 kb on + strandat 5879.931 kb on + strandat 5879.931 kb on + strandat 5879.932 kb on - strandat 5879.932 kb on - strandat 5879.932 kb on - strandat 5879.932 kb on - strandat 5879.971 kb on + strandat 5879.971 kb on + strandat 5879.980 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
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5,877,108 + +0.8
5,877,108 + -0.4
5,877,108 + +3.2
5,877,108 + +0.2
5,877,109 - +0.1
5,877,109 - +0.8
5,877,109 - +0.3
5,877,135 + -1.7
5,877,135 + -1.0
5,877,136 - +1.1
5,877,224 - PP_5151 0.16 -0.1
5,877,242 + PP_5151 0.18 -1.0
5,877,243 - PP_5151 0.18 -0.4
5,877,382 - PP_5151 0.33 -1.1
5,877,423 + PP_5151 0.38 +0.1
5,877,423 + PP_5151 0.38 +0.5
5,877,424 - PP_5151 0.38 +1.4
5,877,424 - PP_5151 0.38 -0.1
5,877,424 - PP_5151 0.38 +0.6
5,877,424 - PP_5151 0.38 -0.4
5,877,424 - PP_5151 0.38 -0.5
5,877,424 - PP_5151 0.38 -0.5
5,877,582 - PP_5151 0.55 +1.0
5,877,621 + PP_5151 0.60 -0.7
5,877,621 + PP_5151 0.60 +0.5
5,877,621 + PP_5151 0.60 +0.6
5,877,621 + PP_5151 0.60 +0.9
5,877,621 + PP_5151 0.60 +0.0
5,877,621 + PP_5151 0.60 -0.5
5,877,622 - PP_5151 0.60 -0.9
5,877,622 - PP_5151 0.60 -0.0
5,877,622 - PP_5151 0.60 -0.2
5,877,622 - PP_5151 0.60 +0.9
5,877,622 - PP_5151 0.60 -1.3
5,877,622 - PP_5151 0.60 +0.3
5,877,622 - PP_5151 0.60 +0.3
5,877,639 + PP_5151 0.62 -0.3
5,877,639 + PP_5151 0.62 -0.4
5,877,640 - PP_5151 0.62 -0.2
5,878,017 + -1.4
5,878,018 - -1.6
5,878,018 - +0.4
5,878,043 + +1.4
5,878,044 - +0.2
5,878,122 + +0.4
5,878,122 + +0.3
5,878,122 + -1.5
5,878,123 - +0.3
5,878,393 - PP_5152 0.34 +1.8
5,878,393 - PP_5152 0.34 -0.1
5,878,497 + PP_5152 0.46 +0.1
5,878,498 - PP_5152 0.46 +0.9
5,878,655 + PP_5152 0.63 +0.7
5,878,656 - PP_5152 0.63 +1.9
5,878,656 - PP_5152 0.63 -0.0
5,878,800 + PP_5152 0.79 -1.0
5,878,801 - PP_5152 0.79 +0.1
5,878,814 + PP_5152 0.80 +0.5
5,878,814 + PP_5152 0.80 +0.9
5,878,815 - PP_5152 0.80 +0.2
5,878,950 + -2.5
5,878,951 - -0.2
5,878,951 - -1.0
5,878,951 - +0.9
5,879,021 + -2.3
5,879,021 + -0.1
5,879,103 - -0.8
5,879,112 + -0.1
5,879,112 + +1.7
5,879,113 - +0.1
5,879,138 - -0.2
5,879,138 - -0.5
5,879,358 + PP_5153 0.27 -1.0
5,879,358 + PP_5153 0.27 +0.9
5,879,359 - PP_5153 0.27 +0.1
5,879,359 - PP_5153 0.27 +0.2
5,879,359 - PP_5153 0.27 +0.6
5,879,362 - PP_5153 0.27 +0.3
5,879,362 - PP_5153 0.27 +0.4
5,879,362 - PP_5153 0.27 +0.7
5,879,362 - PP_5153 0.27 +0.6
5,879,374 + PP_5153 0.29 -1.5
5,879,636 + PP_5153 0.69 +0.5
5,879,637 - PP_5153 0.69 -0.3
5,879,765 + PP_5153 0.88 -0.5
5,879,765 + PP_5153 0.88 -0.5
5,879,765 + PP_5153 0.88 +0.9
5,879,766 - +0.6
5,879,766 - PP_5153 0.88 -0.7
5,879,821 + +0.4
5,879,821 + -0.2
5,879,821 + +0.7
5,879,821 + +0.6
5,879,822 - -0.7
5,879,825 + +1.7
5,879,825 + -0.2
5,879,826 - +1.8
5,879,826 - +1.4
5,879,838 - +3.9
5,879,912 + +0.8
5,879,931 + +0.6
5,879,931 + -1.4
5,879,931 + +1.3
5,879,931 + -0.6
5,879,931 + +0.7
5,879,932 - -0.1
5,879,932 - +0.1
5,879,932 - -1.2
5,879,932 - +0.0
5,879,971 + +0.0
5,879,971 + +0.1
5,879,980 + -1.3

Or see this region's nucleotide sequence