Experiment: Growth at 34C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4411 and PP_4412 overlap by 4 nucleotides PP_4412 and PP_4413 are separated by 171 nucleotides PP_4413 and PP_4415 are separated by 358 nucleotides
PP_4411: PP_4411 - conserved protein of unknown function, at 5,008,517 to 5,009,065
_4411
PP_4412: PP_4412 - conserved protein of unknown function, at 5,009,062 to 5,009,640
_4412
PP_4413: PP_4413 - conserved protein of unknown function, at 5,009,812 to 5,010,132
_4413
PP_4415: PP_4415 - conserved protein of unknown function, at 5,010,491 to 5,011,591
_4415
Position (kb) 5009
5010
5011 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5008.848 kb on - strand, within PP_4411 at 5008.862 kb on + strand, within PP_4411 at 5008.862 kb on + strand, within PP_4411 at 5008.862 kb on + strand, within PP_4411 at 5008.870 kb on - strand, within PP_4411 at 5008.896 kb on - strand, within PP_4411 at 5008.942 kb on + strand, within PP_4411 at 5008.943 kb on - strand, within PP_4411 at 5008.943 kb on - strand, within PP_4411 at 5008.943 kb on - strand, within PP_4411 at 5008.973 kb on + strand, within PP_4411 at 5008.973 kb on + strand, within PP_4411 at 5008.974 kb on - strand, within PP_4411 at 5008.988 kb on + strand, within PP_4411 at 5008.989 kb on - strand, within PP_4411 at 5009.012 kb on + strand at 5009.012 kb on + strand at 5009.013 kb on - strand at 5009.044 kb on + strand at 5009.044 kb on + strand at 5009.045 kb on - strand at 5009.045 kb on - strand at 5009.069 kb on - strand at 5009.083 kb on + strand at 5009.084 kb on - strand at 5009.084 kb on - strand at 5009.086 kb on - strand at 5009.093 kb on - strand at 5009.131 kb on - strand at 5009.229 kb on + strand, within PP_4412 at 5009.229 kb on + strand, within PP_4412 at 5009.229 kb on + strand, within PP_4412 at 5009.230 kb on - strand, within PP_4412 at 5009.242 kb on + strand, within PP_4412 at 5009.242 kb on + strand, within PP_4412 at 5009.242 kb on + strand, within PP_4412 at 5009.242 kb on + strand, within PP_4412 at 5009.243 kb on - strand, within PP_4412 at 5009.243 kb on - strand, within PP_4412 at 5009.274 kb on + strand, within PP_4412 at 5009.274 kb on + strand, within PP_4412 at 5009.294 kb on + strand, within PP_4412 at 5009.294 kb on + strand, within PP_4412 at 5009.295 kb on - strand, within PP_4412 at 5009.295 kb on - strand, within PP_4412 at 5009.311 kb on - strand, within PP_4412 at 5009.321 kb on + strand, within PP_4412 at 5009.322 kb on - strand, within PP_4412 at 5009.322 kb on - strand at 5009.326 kb on + strand, within PP_4412 at 5009.326 kb on + strand, within PP_4412 at 5009.326 kb on + strand, within PP_4412 at 5009.326 kb on + strand, within PP_4412 at 5009.326 kb on + strand, within PP_4412 at 5009.326 kb on + strand, within PP_4412 at 5009.327 kb on - strand, within PP_4412 at 5009.327 kb on - strand, within PP_4412 at 5009.407 kb on + strand, within PP_4412 at 5009.438 kb on + strand, within PP_4412 at 5009.438 kb on + strand, within PP_4412 at 5009.455 kb on + strand, within PP_4412 at 5009.456 kb on - strand, within PP_4412 at 5009.456 kb on - strand, within PP_4412 at 5009.456 kb on - strand, within PP_4412 at 5009.456 kb on - strand, within PP_4412 at 5009.479 kb on + strand, within PP_4412 at 5009.479 kb on + strand, within PP_4412 at 5009.479 kb on + strand, within PP_4412 at 5009.480 kb on - strand, within PP_4412 at 5009.499 kb on + strand, within PP_4412 at 5009.507 kb on - strand, within PP_4412 at 5009.638 kb on + strand at 5009.638 kb on + strand at 5009.638 kb on + strand at 5009.638 kb on + strand at 5009.639 kb on - strand at 5009.639 kb on - strand at 5009.639 kb on - strand at 5009.639 kb on - strand at 5009.835 kb on + strand at 5009.909 kb on + strand, within PP_4413 at 5009.921 kb on + strand, within PP_4413 at 5009.921 kb on + strand, within PP_4413 at 5009.982 kb on + strand, within PP_4413 at 5009.991 kb on + strand, within PP_4413 at 5009.991 kb on + strand, within PP_4413 at 5009.991 kb on + strand, within PP_4413 at 5009.991 kb on + strand, within PP_4413 at 5009.991 kb on + strand, within PP_4413 at 5009.992 kb on - strand, within PP_4413 at 5009.992 kb on - strand, within PP_4413 at 5009.992 kb on - strand, within PP_4413 at 5009.995 kb on + strand, within PP_4413 at 5009.996 kb on - strand, within PP_4413 at 5009.996 kb on - strand, within PP_4413 at 5010.002 kb on + strand, within PP_4413 at 5010.002 kb on + strand, within PP_4413 at 5010.104 kb on + strand at 5010.105 kb on - strand at 5010.157 kb on + strand at 5010.158 kb on - strand at 5010.158 kb on - strand at 5010.158 kb on - strand at 5010.214 kb on + strand at 5010.214 kb on + strand at 5010.214 kb on + strand at 5010.214 kb on + strand at 5010.215 kb on - strand at 5010.215 kb on - strand at 5010.279 kb on + strand at 5010.279 kb on + strand at 5010.279 kb on + strand at 5010.280 kb on - strand at 5010.280 kb on - strand at 5010.361 kb on + strand at 5010.362 kb on - strand at 5010.386 kb on + strand at 5010.386 kb on + strand at 5010.386 kb on + strand at 5010.386 kb on + strand at 5010.387 kb on - strand at 5010.387 kb on - strand at 5010.387 kb on - strand at 5010.399 kb on + strand at 5010.399 kb on + strand at 5010.400 kb on - strand at 5010.405 kb on + strand at 5010.406 kb on - strand at 5010.485 kb on - strand at 5010.485 kb on - strand at 5010.485 kb on - strand at 5010.485 kb on - strand at 5010.555 kb on - strand at 5010.555 kb on - strand at 5010.638 kb on + strand, within PP_4415 at 5010.639 kb on - strand, within PP_4415 at 5010.672 kb on - strand, within PP_4415 at 5010.672 kb on - strand, within PP_4415 at 5010.675 kb on + strand, within PP_4415 at 5010.676 kb on - strand, within PP_4415 at 5010.676 kb on - strand, within PP_4415 at 5010.676 kb on - strand, within PP_4415 at 5010.684 kb on + strand, within PP_4415 at 5010.684 kb on + strand, within PP_4415 at 5010.684 kb on + strand, within PP_4415 at 5010.743 kb on + strand, within PP_4415 at 5010.743 kb on + strand, within PP_4415 at 5010.743 kb on + strand, within PP_4415 at 5010.743 kb on + strand, within PP_4415 at 5010.744 kb on - strand, within PP_4415 at 5010.744 kb on - strand, within PP_4415 at 5010.744 kb on - strand, within PP_4415 at 5010.744 kb on - strand, within PP_4415 at 5010.744 kb on - strand, within PP_4415 at 5010.744 kb on - strand, within PP_4415 at 5010.744 kb on - strand, within PP_4415 at 5010.744 kb on - strand, within PP_4415 at 5010.869 kb on + strand, within PP_4415 at 5010.870 kb on - strand, within PP_4415 at 5010.889 kb on + strand, within PP_4415 at 5010.949 kb on + strand, within PP_4415 at 5010.950 kb on - strand, within PP_4415 at 5010.980 kb on + strand, within PP_4415 at 5010.980 kb on + strand, within PP_4415 at 5010.981 kb on - strand, within PP_4415 at 5010.981 kb on - strand, within PP_4415 at 5011.025 kb on - strand, within PP_4415 at 5011.054 kb on + strand, within PP_4415 at 5011.104 kb on + strand, within PP_4415 at 5011.105 kb on - strand, within PP_4415 at 5011.108 kb on + strand, within PP_4415
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 34C remove 5,008,848 - PP_4411 0.60 +0.8 5,008,862 + PP_4411 0.63 -0.5 5,008,862 + PP_4411 0.63 +1.0 5,008,862 + PP_4411 0.63 -3.0 5,008,870 - PP_4411 0.64 -1.3 5,008,896 - PP_4411 0.69 -0.8 5,008,942 + PP_4411 0.77 -0.0 5,008,943 - PP_4411 0.78 -0.6 5,008,943 - PP_4411 0.78 -1.2 5,008,943 - PP_4411 0.78 +0.1 5,008,973 + PP_4411 0.83 -0.1 5,008,973 + PP_4411 0.83 -0.6 5,008,974 - PP_4411 0.83 -0.4 5,008,988 + PP_4411 0.86 -0.7 5,008,989 - PP_4411 0.86 +0.6 5,009,012 + -0.9 5,009,012 + -0.0 5,009,013 - -0.1 5,009,044 + -3.2 5,009,044 + +0.7 5,009,045 - -0.1 5,009,045 - +0.9 5,009,069 - -1.0 5,009,083 + +0.5 5,009,084 - -0.2 5,009,084 - +0.5 5,009,086 - -0.2 5,009,093 - +0.5 5,009,131 - +1.5 5,009,229 + PP_4412 0.29 +0.5 5,009,229 + PP_4412 0.29 -0.8 5,009,229 + PP_4412 0.29 -1.2 5,009,230 - PP_4412 0.29 -0.2 5,009,242 + PP_4412 0.31 -0.4 5,009,242 + PP_4412 0.31 +0.5 5,009,242 + PP_4412 0.31 -0.1 5,009,242 + PP_4412 0.31 +0.1 5,009,243 - PP_4412 0.31 +0.1 5,009,243 - PP_4412 0.31 -0.1 5,009,274 + PP_4412 0.37 -0.8 5,009,274 + PP_4412 0.37 +0.9 5,009,294 + PP_4412 0.40 -0.6 5,009,294 + PP_4412 0.40 +0.2 5,009,295 - PP_4412 0.40 +1.0 5,009,295 - PP_4412 0.40 -2.0 5,009,311 - PP_4412 0.43 -2.1 5,009,321 + PP_4412 0.45 +0.2 5,009,322 - PP_4412 0.45 +0.4 5,009,322 - +0.5 5,009,326 + PP_4412 0.46 +0.7 5,009,326 + PP_4412 0.46 +0.0 5,009,326 + PP_4412 0.46 +0.2 5,009,326 + PP_4412 0.46 +0.9 5,009,326 + PP_4412 0.46 +0.3 5,009,326 + PP_4412 0.46 -1.0 5,009,327 - PP_4412 0.46 +1.1 5,009,327 - PP_4412 0.46 +0.8 5,009,407 + PP_4412 0.60 +1.0 5,009,438 + PP_4412 0.65 +0.5 5,009,438 + PP_4412 0.65 -0.2 5,009,455 + PP_4412 0.68 +0.8 5,009,456 - PP_4412 0.68 +0.5 5,009,456 - PP_4412 0.68 +0.2 5,009,456 - PP_4412 0.68 -0.2 5,009,456 - PP_4412 0.68 -0.3 5,009,479 + PP_4412 0.72 -0.4 5,009,479 + PP_4412 0.72 +1.1 5,009,479 + PP_4412 0.72 +1.0 5,009,480 - PP_4412 0.72 -0.6 5,009,499 + PP_4412 0.75 +0.2 5,009,507 - PP_4412 0.77 -1.1 5,009,638 + -0.2 5,009,638 + -0.3 5,009,638 + +0.8 5,009,638 + +1.2 5,009,639 - +0.0 5,009,639 - -0.1 5,009,639 - +0.2 5,009,639 - +0.2 5,009,835 + -0.1 5,009,909 + PP_4413 0.30 -1.5 5,009,921 + PP_4413 0.34 -1.2 5,009,921 + PP_4413 0.34 -1.0 5,009,982 + PP_4413 0.53 -0.2 5,009,991 + PP_4413 0.56 +0.6 5,009,991 + PP_4413 0.56 -0.8 5,009,991 + PP_4413 0.56 -0.6 5,009,991 + PP_4413 0.56 -3.1 5,009,991 + PP_4413 0.56 -0.3 5,009,992 - PP_4413 0.56 -1.5 5,009,992 - PP_4413 0.56 -0.4 5,009,992 - PP_4413 0.56 -2.1 5,009,995 + PP_4413 0.57 -1.1 5,009,996 - PP_4413 0.57 -0.3 5,009,996 - PP_4413 0.57 +0.4 5,010,002 + PP_4413 0.59 -0.2 5,010,002 + PP_4413 0.59 -2.3 5,010,104 + -1.3 5,010,105 - +0.3 5,010,157 + -0.1 5,010,158 - -1.1 5,010,158 - -0.1 5,010,158 - +0.2 5,010,214 + +0.2 5,010,214 + -0.3 5,010,214 + +0.1 5,010,214 + -0.8 5,010,215 - +1.5 5,010,215 - +0.9 5,010,279 + +0.2 5,010,279 + -0.9 5,010,279 + +0.2 5,010,280 - +1.1 5,010,280 - +1.1 5,010,361 + +0.7 5,010,362 - -0.5 5,010,386 + +0.1 5,010,386 + -0.3 5,010,386 + +0.3 5,010,386 + -1.3 5,010,387 - +0.5 5,010,387 - +1.1 5,010,387 - +0.6 5,010,399 + -0.5 5,010,399 + -0.0 5,010,400 - +0.0 5,010,405 + -1.1 5,010,406 - +1.2 5,010,485 - -0.7 5,010,485 - +0.7 5,010,485 - -0.5 5,010,485 - +2.8 5,010,555 - -0.8 5,010,555 - +0.4 5,010,638 + PP_4415 0.13 -0.2 5,010,639 - PP_4415 0.13 +0.3 5,010,672 - PP_4415 0.16 +0.2 5,010,672 - PP_4415 0.16 +0.2 5,010,675 + PP_4415 0.17 +0.9 5,010,676 - PP_4415 0.17 +0.1 5,010,676 - PP_4415 0.17 -0.1 5,010,676 - PP_4415 0.17 +1.0 5,010,684 + PP_4415 0.18 -0.6 5,010,684 + PP_4415 0.18 +0.2 5,010,684 + PP_4415 0.18 +0.7 5,010,743 + PP_4415 0.23 -0.3 5,010,743 + PP_4415 0.23 -2.9 5,010,743 + PP_4415 0.23 +1.0 5,010,743 + PP_4415 0.23 +0.9 5,010,744 - PP_4415 0.23 +0.7 5,010,744 - PP_4415 0.23 +0.5 5,010,744 - PP_4415 0.23 -1.7 5,010,744 - PP_4415 0.23 -0.8 5,010,744 - PP_4415 0.23 +0.3 5,010,744 - PP_4415 0.23 +1.1 5,010,744 - PP_4415 0.23 +1.2 5,010,744 - PP_4415 0.23 -2.1 5,010,869 + PP_4415 0.34 -0.3 5,010,870 - PP_4415 0.34 +0.5 5,010,889 + PP_4415 0.36 +0.2 5,010,949 + PP_4415 0.42 -1.0 5,010,950 - PP_4415 0.42 -0.2 5,010,980 + PP_4415 0.44 +0.6 5,010,980 + PP_4415 0.44 +1.1 5,010,981 - PP_4415 0.45 +0.4 5,010,981 - PP_4415 0.45 +0.2 5,011,025 - PP_4415 0.49 -0.1 5,011,054 + PP_4415 0.51 +0.3 5,011,104 + PP_4415 0.56 +1.3 5,011,105 - PP_4415 0.56 -1.8 5,011,108 + PP_4415 0.56 +1.0
Or see this region's nucleotide sequence