Experiment: Growth at 34C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4222 and PP_4223 are separated by 105 nucleotides PP_4223 and PP_4224 are separated by 217 nucleotides
PP_4222: PP_4222 - putative SyrP protein, at 4,793,995 to 4,794,978
_4222
PP_4223: PP_4223 - diaminobutyrate-2-oxoglutarate transaminase, at 4,795,084 to 4,796,442
_4223
PP_4224: PP_4224 - Sensor histidine kinase, at 4,796,660 to 4,797,982
_4224
Position (kb) 4795
4796
4797 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4794.200 kb on + strand, within PP_4222 at 4794.201 kb on - strand, within PP_4222 at 4794.201 kb on - strand, within PP_4222 at 4794.201 kb on - strand, within PP_4222 at 4794.266 kb on - strand, within PP_4222 at 4794.305 kb on - strand, within PP_4222 at 4794.305 kb on - strand, within PP_4222 at 4794.305 kb on - strand, within PP_4222 at 4794.410 kb on + strand, within PP_4222 at 4794.410 kb on + strand, within PP_4222 at 4794.410 kb on + strand, within PP_4222 at 4794.422 kb on - strand, within PP_4222 at 4794.479 kb on + strand at 4794.480 kb on - strand, within PP_4222 at 4794.491 kb on + strand, within PP_4222 at 4794.491 kb on + strand, within PP_4222 at 4794.492 kb on - strand, within PP_4222 at 4794.523 kb on + strand, within PP_4222 at 4794.523 kb on + strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.638 kb on + strand, within PP_4222 at 4794.638 kb on + strand, within PP_4222 at 4794.681 kb on - strand, within PP_4222 at 4794.695 kb on + strand, within PP_4222 at 4794.695 kb on + strand, within PP_4222 at 4794.696 kb on - strand, within PP_4222 at 4794.696 kb on - strand, within PP_4222 at 4794.740 kb on + strand, within PP_4222 at 4794.923 kb on - strand at 4794.970 kb on + strand at 4794.970 kb on + strand at 4794.970 kb on + strand at 4794.971 kb on - strand at 4794.971 kb on - strand at 4794.971 kb on - strand at 4795.096 kb on + strand at 4795.887 kb on - strand, within PP_4223 at 4795.893 kb on - strand, within PP_4223 at 4795.998 kb on - strand, within PP_4223 at 4796.363 kb on + strand at 4796.453 kb on - strand at 4796.488 kb on + strand at 4796.489 kb on - strand at 4796.489 kb on - strand at 4796.489 kb on - strand at 4796.681 kb on + strand at 4796.710 kb on + strand at 4796.711 kb on - strand at 4796.711 kb on - strand at 4796.711 kb on - strand at 4796.711 kb on - strand at 4796.994 kb on + strand, within PP_4224 at 4796.994 kb on + strand, within PP_4224 at 4797.031 kb on + strand, within PP_4224 at 4797.129 kb on - strand, within PP_4224 at 4797.129 kb on - strand, within PP_4224 at 4797.129 kb on - strand, within PP_4224
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 34C remove 4,794,200 + PP_4222 0.21 -0.1 4,794,201 - PP_4222 0.21 +0.0 4,794,201 - PP_4222 0.21 +0.2 4,794,201 - PP_4222 0.21 -1.4 4,794,266 - PP_4222 0.28 -1.0 4,794,305 - PP_4222 0.32 -1.0 4,794,305 - PP_4222 0.32 -0.6 4,794,305 - PP_4222 0.32 -1.0 4,794,410 + PP_4222 0.42 +0.4 4,794,410 + PP_4222 0.42 -1.4 4,794,410 + PP_4222 0.42 +0.3 4,794,422 - PP_4222 0.43 -2.7 4,794,479 + +1.7 4,794,480 - PP_4222 0.49 -1.2 4,794,491 + PP_4222 0.50 +0.0 4,794,491 + PP_4222 0.50 -0.7 4,794,492 - PP_4222 0.51 -0.5 4,794,523 + PP_4222 0.54 +0.6 4,794,523 + PP_4222 0.54 -0.7 4,794,606 - PP_4222 0.62 +0.7 4,794,606 - PP_4222 0.62 +0.4 4,794,606 - PP_4222 0.62 +0.4 4,794,606 - PP_4222 0.62 -0.1 4,794,638 + PP_4222 0.65 +0.4 4,794,638 + PP_4222 0.65 -0.2 4,794,681 - PP_4222 0.70 +1.6 4,794,695 + PP_4222 0.71 -0.6 4,794,695 + PP_4222 0.71 -1.6 4,794,696 - PP_4222 0.71 -0.1 4,794,696 - PP_4222 0.71 +0.3 4,794,740 + PP_4222 0.76 -0.7 4,794,923 - -1.0 4,794,970 + -1.1 4,794,970 + -3.6 4,794,970 + -0.2 4,794,971 - +0.9 4,794,971 - -0.3 4,794,971 - -0.9 4,795,096 + -0.2 4,795,887 - PP_4223 0.59 +2.5 4,795,893 - PP_4223 0.60 -0.0 4,795,998 - PP_4223 0.67 -0.3 4,796,363 + -0.6 4,796,453 - -1.5 4,796,488 + +0.7 4,796,489 - +0.4 4,796,489 - -1.3 4,796,489 - +1.1 4,796,681 + +1.1 4,796,710 + -0.2 4,796,711 - -0.8 4,796,711 - -0.1 4,796,711 - +0.6 4,796,711 - -0.8 4,796,994 + PP_4224 0.25 +0.5 4,796,994 + PP_4224 0.25 -0.3 4,797,031 + PP_4224 0.28 +0.0 4,797,129 - PP_4224 0.35 -0.8 4,797,129 - PP_4224 0.35 -0.5 4,797,129 - PP_4224 0.35 +0.2
Or see this region's nucleotide sequence