Strain Fitness in Pseudomonas putida KT2440 around PP_3201

Experiment: Growth at 34C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5590 and PP_3201 are separated by 54 nucleotidesPP_3201 and PP_3202 are separated by 12 nucleotides PP_5590: PP_5590 - conserved exported protein of unknown function, at 3,631,107 to 3,632,474 _5590 PP_3201: PP_3201 - BNR domain protein, at 3,632,529 to 3,633,590 _3201 PP_3202: PP_3202 - putative Transporter, at 3,633,603 to 3,636,083 _3202 Position (kb) 3632 3633 3634Strain fitness (log2 ratio) -2 -1 0 1at 3631.884 kb on + strand, within PP_5590at 3631.884 kb on + strand, within PP_5590at 3631.885 kb on - strandat 3631.885 kb on - strand, within PP_5590at 3631.980 kb on + strand, within PP_5590at 3632.040 kb on + strand, within PP_5590at 3632.040 kb on + strand, within PP_5590at 3632.040 kb on + strand, within PP_5590at 3632.040 kb on + strand, within PP_5590at 3632.041 kb on - strand, within PP_5590at 3632.041 kb on - strand, within PP_5590at 3632.041 kb on - strand, within PP_5590at 3632.049 kb on + strand, within PP_5590at 3632.049 kb on + strand, within PP_5590at 3632.205 kb on + strand, within PP_5590at 3632.206 kb on - strand, within PP_5590at 3632.206 kb on - strand, within PP_5590at 3632.206 kb on - strand, within PP_5590at 3632.206 kb on - strand, within PP_5590at 3632.208 kb on + strand, within PP_5590at 3632.209 kb on - strand, within PP_5590at 3632.250 kb on + strand, within PP_5590at 3632.251 kb on - strand, within PP_5590at 3632.251 kb on - strand, within PP_5590at 3632.403 kb on + strandat 3632.507 kb on + strandat 3632.508 kb on - strandat 3632.545 kb on - strandat 3632.545 kb on - strandat 3633.043 kb on - strand, within PP_3201at 3633.043 kb on - strand, within PP_3201at 3633.129 kb on + strand, within PP_3201at 3633.130 kb on - strand, within PP_3201at 3633.159 kb on + strand, within PP_3201at 3633.159 kb on + strandat 3633.160 kb on - strand, within PP_3201at 3633.213 kb on + strand, within PP_3201at 3633.214 kb on - strand, within PP_3201at 3633.813 kb on + strandat 3633.814 kb on - strandat 3633.814 kb on - strandat 3633.884 kb on + strand, within PP_3202at 3633.892 kb on - strand, within PP_3202at 3633.903 kb on + strand, within PP_3202at 3633.938 kb on - strand, within PP_3202at 3633.939 kb on + strand, within PP_3202at 3633.939 kb on + strand, within PP_3202at 3633.939 kb on + strand, within PP_3202at 3633.939 kb on + strand, within PP_3202at 3634.200 kb on + strand, within PP_3202at 3634.201 kb on - strand, within PP_3202at 3634.368 kb on + strand, within PP_3202at 3634.368 kb on + strand, within PP_3202at 3634.369 kb on - strand, within PP_3202at 3634.369 kb on - strand, within PP_3202at 3634.375 kb on - strand, within PP_3202

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
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3,631,884 + PP_5590 0.57 -1.3
3,631,884 + PP_5590 0.57 -0.9
3,631,885 - -0.9
3,631,885 - PP_5590 0.57 +0.1
3,631,980 + PP_5590 0.64 +0.3
3,632,040 + PP_5590 0.68 +0.4
3,632,040 + PP_5590 0.68 +1.0
3,632,040 + PP_5590 0.68 -1.1
3,632,040 + PP_5590 0.68 +0.1
3,632,041 - PP_5590 0.68 -0.7
3,632,041 - PP_5590 0.68 -0.9
3,632,041 - PP_5590 0.68 -0.7
3,632,049 + PP_5590 0.69 +0.1
3,632,049 + PP_5590 0.69 -1.2
3,632,205 + PP_5590 0.80 +0.9
3,632,206 - PP_5590 0.80 +0.9
3,632,206 - PP_5590 0.80 -0.4
3,632,206 - PP_5590 0.80 +0.5
3,632,206 - PP_5590 0.80 -0.4
3,632,208 + PP_5590 0.80 -0.3
3,632,209 - PP_5590 0.81 -0.5
3,632,250 + PP_5590 0.84 -0.3
3,632,251 - PP_5590 0.84 +0.4
3,632,251 - PP_5590 0.84 -1.2
3,632,403 + +0.1
3,632,507 + +0.4
3,632,508 - +0.2
3,632,545 - -0.8
3,632,545 - -1.5
3,633,043 - PP_3201 0.48 +1.2
3,633,043 - PP_3201 0.48 +0.1
3,633,129 + PP_3201 0.56 +1.1
3,633,130 - PP_3201 0.57 +0.7
3,633,159 + PP_3201 0.59 +1.4
3,633,159 + +1.1
3,633,160 - PP_3201 0.59 +0.3
3,633,213 + PP_3201 0.64 +0.6
3,633,214 - PP_3201 0.65 +1.5
3,633,813 + -2.3
3,633,814 - +1.1
3,633,814 - -2.7
3,633,884 + PP_3202 0.11 +0.7
3,633,892 - PP_3202 0.12 -1.5
3,633,903 + PP_3202 0.12 +0.0
3,633,938 - PP_3202 0.14 -0.3
3,633,939 + PP_3202 0.14 -0.6
3,633,939 + PP_3202 0.14 -2.4
3,633,939 + PP_3202 0.14 +1.3
3,633,939 + PP_3202 0.14 +0.0
3,634,200 + PP_3202 0.24 -0.0
3,634,201 - PP_3202 0.24 -0.3
3,634,368 + PP_3202 0.31 -2.0
3,634,368 + PP_3202 0.31 -0.3
3,634,369 - PP_3202 0.31 +0.0
3,634,369 - PP_3202 0.31 -0.6
3,634,375 - PP_3202 0.31 +1.3

Or see this region's nucleotide sequence