Strain Fitness in Pseudomonas putida KT2440 around PP_1605

Experiment: Growth at 34C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1604 and PP_1605 are separated by 1 nucleotidesPP_1605 and PP_1606 are separated by 186 nucleotides PP_1604: PP_1604 - Lipid-A-disaccharide synthase, at 1,798,078 to 1,799,205 _1604 PP_1605: PP_1605 - Ribonuclease HII, at 1,799,207 to 1,799,830 _1605 PP_1606: PP_1606 - DNA polymerase III, alpha subunit, at 1,800,017 to 1,803,541 _1606 Position (kb) 1799 1800Strain fitness (log2 ratio) -2 -1 0 1 2at 1799.236 kb on - strandat 1799.350 kb on + strand, within PP_1605at 1799.512 kb on + strand, within PP_1605at 1799.513 kb on - strand, within PP_1605at 1799.749 kb on + strand, within PP_1605at 1799.749 kb on + strand, within PP_1605at 1799.965 kb on + strandat 1799.965 kb on + strandat 1799.966 kb on - strandat 1799.966 kb on - strandat 1799.969 kb on + strandat 1800.004 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
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1,799,236 - -0.4
1,799,350 + PP_1605 0.23 +1.8
1,799,512 + PP_1605 0.49 +1.4
1,799,513 - PP_1605 0.49 +0.9
1,799,749 + PP_1605 0.87 +0.2
1,799,749 + PP_1605 0.87 +0.3
1,799,965 + -0.2
1,799,965 + +0.0
1,799,966 - -1.9
1,799,966 - -1.5
1,799,969 + +0.1
1,800,004 + -0.2

Or see this region's nucleotide sequence