Strain Fitness in Pseudomonas putida KT2440 around PP_1187

Experiment: Growth at 34C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1185 and PP_1186 are separated by 196 nucleotidesPP_1186 and PP_1187 overlap by 4 nucleotidesPP_1187 and PP_1188 are separated by 350 nucleotides PP_1185: PP_1185 - Outer membrane protein H1, at 1,360,135 to 1,360,740 _1185 PP_1186: PP_1186 - two component system DNA-binding transcriptional dual regulator, at 1,360,937 to 1,361,614 _1186 PP_1187: PP_1187 - sensor protein, at 1,361,611 to 1,362,957 _1187 PP_1188: PP_1188 - C4-dicarboxylate transport protein, at 1,363,308 to 1,364,630 _1188 Position (kb) 1361 1362 1363Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1360.621 kb on + strand, within PP_1185at 1360.628 kb on - strand, within PP_1185at 1360.714 kb on + strandat 1360.714 kb on + strandat 1360.729 kb on + strandat 1360.729 kb on + strandat 1360.730 kb on - strandat 1360.730 kb on - strandat 1360.762 kb on + strandat 1360.848 kb on + strandat 1360.848 kb on + strandat 1360.849 kb on - strandat 1360.849 kb on - strandat 1360.874 kb on + strandat 1360.875 kb on - strandat 1360.918 kb on + strandat 1360.918 kb on + strandat 1360.918 kb on + strandat 1360.918 kb on + strandat 1360.918 kb on + strandat 1360.918 kb on + strandat 1360.918 kb on + strandat 1360.919 kb on - strandat 1360.919 kb on - strandat 1360.924 kb on + strandat 1360.924 kb on + strandat 1360.924 kb on + strandat 1360.925 kb on - strandat 1360.925 kb on - strandat 1360.925 kb on - strandat 1360.925 kb on - strandat 1360.986 kb on - strandat 1361.228 kb on + strand, within PP_1186at 1361.229 kb on - strand, within PP_1186at 1361.414 kb on + strand, within PP_1186at 1361.414 kb on + strand, within PP_1186at 1361.415 kb on - strand, within PP_1186at 1361.472 kb on - strandat 1361.588 kb on + strandat 1361.589 kb on - strandat 1361.589 kb on - strandat 1361.828 kb on - strand, within PP_1187at 1361.839 kb on + strand, within PP_1187at 1361.839 kb on + strand, within PP_1187at 1361.857 kb on + strand, within PP_1187at 1361.857 kb on + strand, within PP_1187at 1361.858 kb on - strand, within PP_1187at 1361.858 kb on - strand, within PP_1187at 1361.859 kb on + strand, within PP_1187at 1361.859 kb on + strand, within PP_1187at 1361.860 kb on - strand, within PP_1187at 1361.860 kb on - strand, within PP_1187at 1361.860 kb on - strand, within PP_1187at 1361.923 kb on + strand, within PP_1187at 1361.923 kb on + strand, within PP_1187at 1361.995 kb on + strand, within PP_1187at 1361.996 kb on + strand, within PP_1187at 1361.996 kb on + strand, within PP_1187at 1361.996 kb on + strand, within PP_1187at 1362.011 kb on + strand, within PP_1187at 1362.012 kb on - strand, within PP_1187at 1362.056 kb on + strand, within PP_1187at 1362.057 kb on - strand, within PP_1187at 1362.057 kb on - strand, within PP_1187at 1362.057 kb on - strand, within PP_1187at 1362.074 kb on - strand, within PP_1187at 1362.074 kb on - strand, within PP_1187at 1362.109 kb on + strand, within PP_1187at 1362.273 kb on + strand, within PP_1187at 1362.326 kb on - strandat 1362.479 kb on - strand, within PP_1187at 1362.530 kb on + strand, within PP_1187at 1362.531 kb on - strand, within PP_1187at 1362.531 kb on - strand, within PP_1187at 1362.632 kb on + strand, within PP_1187at 1362.739 kb on + strand, within PP_1187at 1362.883 kb on + strandat 1362.883 kb on + strandat 1362.883 kb on + strandat 1362.883 kb on + strandat 1362.962 kb on + strandat 1363.118 kb on + strandat 1363.175 kb on + strandat 1363.246 kb on - strandat 1363.341 kb on + strandat 1363.341 kb on + strandat 1363.341 kb on + strandat 1363.341 kb on + strandat 1363.342 kb on - strandat 1363.342 kb on - strandat 1363.389 kb on + strandat 1363.389 kb on + strandat 1363.390 kb on - strandat 1363.390 kb on - strandat 1363.551 kb on + strand, within PP_1188at 1363.551 kb on + strand, within PP_1188at 1363.552 kb on - strand, within PP_1188at 1363.671 kb on + strand, within PP_1188at 1363.672 kb on - strand, within PP_1188at 1363.716 kb on - strand, within PP_1188at 1363.716 kb on - strand, within PP_1188at 1363.821 kb on + strand, within PP_1188at 1363.821 kb on + strand, within PP_1188at 1363.822 kb on - strand, within PP_1188at 1363.944 kb on + strand, within PP_1188at 1363.945 kb on - strand, within PP_1188at 1363.945 kb on - strand, within PP_1188

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
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1,360,621 + PP_1185 0.80 -0.9
1,360,628 - PP_1185 0.81 -0.8
1,360,714 + +0.3
1,360,714 + +0.3
1,360,729 + -0.1
1,360,729 + -1.6
1,360,730 - -1.2
1,360,730 - -0.3
1,360,762 + -0.1
1,360,848 + -0.3
1,360,848 + +0.2
1,360,849 - +1.5
1,360,849 - -2.4
1,360,874 + -0.4
1,360,875 - +0.4
1,360,918 + -1.0
1,360,918 + -0.0
1,360,918 + -0.9
1,360,918 + +0.3
1,360,918 + -3.1
1,360,918 + +0.3
1,360,918 + +0.3
1,360,919 - -0.1
1,360,919 - +1.1
1,360,924 + +0.7
1,360,924 + -0.4
1,360,924 + +0.6
1,360,925 - -2.3
1,360,925 - +0.9
1,360,925 - +0.9
1,360,925 - -0.7
1,360,986 - +0.8
1,361,228 + PP_1186 0.43 +0.4
1,361,229 - PP_1186 0.43 -1.1
1,361,414 + PP_1186 0.70 +0.3
1,361,414 + PP_1186 0.70 +1.5
1,361,415 - PP_1186 0.71 -1.8
1,361,472 - +4.1
1,361,588 + -0.4
1,361,589 - -0.5
1,361,589 - +1.0
1,361,828 - PP_1187 0.16 +0.9
1,361,839 + PP_1187 0.17 -0.1
1,361,839 + PP_1187 0.17 +2.1
1,361,857 + PP_1187 0.18 +0.2
1,361,857 + PP_1187 0.18 +1.9
1,361,858 - PP_1187 0.18 -0.6
1,361,858 - PP_1187 0.18 +0.9
1,361,859 + PP_1187 0.18 -2.5
1,361,859 + PP_1187 0.18 +0.5
1,361,860 - PP_1187 0.18 +0.8
1,361,860 - PP_1187 0.18 +1.2
1,361,860 - PP_1187 0.18 -0.9
1,361,923 + PP_1187 0.23 +0.3
1,361,923 + PP_1187 0.23 -2.4
1,361,995 + PP_1187 0.29 -0.7
1,361,996 + PP_1187 0.29 +0.8
1,361,996 + PP_1187 0.29 +0.8
1,361,996 + PP_1187 0.29 +0.7
1,362,011 + PP_1187 0.30 +1.0
1,362,012 - PP_1187 0.30 +2.6
1,362,056 + PP_1187 0.33 -0.2
1,362,057 - PP_1187 0.33 +0.0
1,362,057 - PP_1187 0.33 +1.7
1,362,057 - PP_1187 0.33 -0.8
1,362,074 - PP_1187 0.34 -0.6
1,362,074 - PP_1187 0.34 +1.0
1,362,109 + PP_1187 0.37 +1.3
1,362,273 + PP_1187 0.49 +0.8
1,362,326 - +0.2
1,362,479 - PP_1187 0.64 +1.6
1,362,530 + PP_1187 0.68 +0.5
1,362,531 - PP_1187 0.68 -0.1
1,362,531 - PP_1187 0.68 -0.9
1,362,632 + PP_1187 0.76 +0.4
1,362,739 + PP_1187 0.84 -0.2
1,362,883 + -0.9
1,362,883 + -0.6
1,362,883 + +1.1
1,362,883 + +0.3
1,362,962 + -0.0
1,363,118 + +0.1
1,363,175 + +0.9
1,363,246 - -1.7
1,363,341 + +0.9
1,363,341 + +1.9
1,363,341 + +0.3
1,363,341 + -0.2
1,363,342 - -0.1
1,363,342 - +0.5
1,363,389 + +0.4
1,363,389 + +0.5
1,363,390 - +0.8
1,363,390 - +0.1
1,363,551 + PP_1188 0.18 -1.3
1,363,551 + PP_1188 0.18 -0.3
1,363,552 - PP_1188 0.18 +0.4
1,363,671 + PP_1188 0.27 +0.3
1,363,672 - PP_1188 0.28 -0.3
1,363,716 - PP_1188 0.31 +1.6
1,363,716 - PP_1188 0.31 +0.5
1,363,821 + PP_1188 0.39 +1.3
1,363,821 + PP_1188 0.39 +0.8
1,363,822 - PP_1188 0.39 +1.1
1,363,944 + PP_1188 0.48 -0.7
1,363,945 - PP_1188 0.48 -0.0
1,363,945 - PP_1188 0.48 +0.1

Or see this region's nucleotide sequence