Strain Fitness in Pseudomonas putida KT2440 around PP_1005

Experiment: Growth at 34C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1003 and PP_1004 overlap by 21 nucleotidesPP_1004 and PP_1005 are separated by 54 nucleotidesPP_1005 and PP_1006 are separated by 140 nucleotides PP_1003: PP_1003 - arginine/ornithine antiporter, at 1,142,865 to 1,144,292 _1003 PP_1004: PP_1004 - conserved protein of unknown function, at 1,144,272 to 1,144,685 _1004 PP_1005: PP_1005 - Heme oxygenase, at 1,144,740 to 1,145,333 _1005 PP_1006: PP_1006 - putative outer membrane heme receptor, at 1,145,474 to 1,148,062 _1006 Position (kb) 1144 1145 1146Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1143.905 kb on + strand, within PP_1003at 1143.906 kb on - strand, within PP_1003at 1143.923 kb on + strand, within PP_1003at 1143.927 kb on + strand, within PP_1003at 1143.927 kb on + strand, within PP_1003at 1143.927 kb on + strand, within PP_1003at 1143.927 kb on + strand, within PP_1003at 1143.928 kb on - strand, within PP_1003at 1143.928 kb on - strand, within PP_1003at 1143.972 kb on + strand, within PP_1003at 1143.973 kb on - strand, within PP_1003at 1143.973 kb on - strand, within PP_1003at 1143.991 kb on - strand, within PP_1003at 1144.084 kb on - strand, within PP_1003at 1144.101 kb on + strand, within PP_1003at 1144.101 kb on + strand, within PP_1003at 1144.102 kb on - strand, within PP_1003at 1144.143 kb on + strand, within PP_1003at 1144.144 kb on - strand, within PP_1003at 1144.260 kb on + strandat 1144.261 kb on - strandat 1144.269 kb on + strandat 1144.478 kb on + strand, within PP_1004at 1144.479 kb on - strand, within PP_1004at 1144.630 kb on + strand, within PP_1004at 1144.631 kb on - strand, within PP_1004at 1144.631 kb on - strand, within PP_1004at 1144.677 kb on + strandat 1144.698 kb on + strandat 1144.698 kb on + strandat 1144.698 kb on + strandat 1144.699 kb on - strandat 1144.699 kb on - strandat 1144.699 kb on - strandat 1144.765 kb on + strandat 1145.190 kb on + strand, within PP_1005at 1145.190 kb on + strand, within PP_1005at 1145.191 kb on - strand, within PP_1005at 1145.191 kb on - strand, within PP_1005at 1145.191 kb on - strand, within PP_1005at 1145.191 kb on - strand, within PP_1005at 1145.191 kb on - strand, within PP_1005at 1145.194 kb on + strand, within PP_1005at 1145.195 kb on - strand, within PP_1005at 1145.195 kb on - strand, within PP_1005at 1145.361 kb on - strandat 1145.364 kb on + strandat 1145.365 kb on - strandat 1145.365 kb on - strandat 1145.365 kb on - strandat 1145.407 kb on - strandat 1145.407 kb on - strandat 1145.467 kb on + strandat 1145.498 kb on - strandat 1145.498 kb on - strandat 1145.575 kb on - strandat 1145.602 kb on - strandat 1145.602 kb on - strandat 1145.622 kb on + strandat 1145.623 kb on - strandat 1145.623 kb on - strandat 1145.623 kb on - strandat 1145.623 kb on - strandat 1145.623 kb on - strandat 1145.661 kb on + strandat 1145.661 kb on + strandat 1145.661 kb on + strandat 1145.661 kb on + strandat 1145.661 kb on + strandat 1145.662 kb on - strandat 1145.662 kb on - strandat 1145.662 kb on - strandat 1145.662 kb on - strandat 1145.688 kb on + strandat 1145.689 kb on - strandat 1145.713 kb on + strandat 1145.713 kb on + strandat 1145.714 kb on - strandat 1145.731 kb on - strandat 1145.731 kb on - strandat 1145.793 kb on + strand, within PP_1006at 1145.793 kb on + strand, within PP_1006at 1145.794 kb on - strand, within PP_1006at 1145.822 kb on + strand, within PP_1006at 1145.822 kb on + strand, within PP_1006at 1145.822 kb on + strand, within PP_1006at 1145.822 kb on + strand, within PP_1006at 1145.880 kb on + strand, within PP_1006at 1145.880 kb on + strand, within PP_1006at 1145.880 kb on + strand, within PP_1006at 1145.880 kb on + strand, within PP_1006at 1145.880 kb on + strand, within PP_1006at 1145.880 kb on + strand, within PP_1006at 1145.880 kb on + strand, within PP_1006at 1145.880 kb on + strand, within PP_1006at 1145.881 kb on - strand, within PP_1006at 1145.881 kb on - strand, within PP_1006at 1145.881 kb on - strand, within PP_1006at 1145.881 kb on - strand, within PP_1006at 1145.881 kb on - strand, within PP_1006at 1145.881 kb on - strand, within PP_1006at 1145.881 kb on - strand, within PP_1006at 1145.881 kb on - strand, within PP_1006at 1145.886 kb on + strand, within PP_1006at 1145.886 kb on + strand, within PP_1006at 1145.886 kb on + strand, within PP_1006at 1145.887 kb on - strand, within PP_1006at 1145.887 kb on - strand, within PP_1006at 1145.907 kb on + strand, within PP_1006at 1145.907 kb on + strand, within PP_1006at 1146.054 kb on + strand, within PP_1006at 1146.054 kb on + strand, within PP_1006at 1146.063 kb on + strand, within PP_1006at 1146.063 kb on + strand, within PP_1006at 1146.064 kb on - strand, within PP_1006at 1146.064 kb on - strand, within PP_1006at 1146.148 kb on + strand, within PP_1006at 1146.149 kb on - strand, within PP_1006at 1146.198 kb on + strand, within PP_1006at 1146.198 kb on + strand, within PP_1006at 1146.198 kb on + strand, within PP_1006at 1146.198 kb on + strand, within PP_1006at 1146.198 kb on + strand, within PP_1006at 1146.199 kb on - strand, within PP_1006at 1146.199 kb on - strand, within PP_1006at 1146.199 kb on - strand, within PP_1006at 1146.199 kb on - strand, within PP_1006at 1146.199 kb on - strand, within PP_1006at 1146.237 kb on + strand, within PP_1006at 1146.238 kb on - strand, within PP_1006at 1146.238 kb on - strand, within PP_1006at 1146.238 kb on - strand, within PP_1006at 1146.255 kb on + strand, within PP_1006at 1146.255 kb on + strand, within PP_1006at 1146.256 kb on - strand, within PP_1006at 1146.256 kb on - strand, within PP_1006at 1146.256 kb on - strand, within PP_1006at 1146.274 kb on - strand, within PP_1006at 1146.274 kb on - strand, within PP_1006

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
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1,143,905 + PP_1003 0.73 +1.8
1,143,906 - PP_1003 0.73 -3.2
1,143,923 + PP_1003 0.74 +0.3
1,143,927 + PP_1003 0.74 -1.0
1,143,927 + PP_1003 0.74 +0.3
1,143,927 + PP_1003 0.74 -1.2
1,143,927 + PP_1003 0.74 -0.1
1,143,928 - PP_1003 0.74 +0.7
1,143,928 - PP_1003 0.74 +1.5
1,143,972 + PP_1003 0.78 +0.1
1,143,973 - PP_1003 0.78 -0.0
1,143,973 - PP_1003 0.78 +0.5
1,143,991 - PP_1003 0.79 -0.0
1,144,084 - PP_1003 0.85 -0.6
1,144,101 + PP_1003 0.87 +0.2
1,144,101 + PP_1003 0.87 -0.0
1,144,102 - PP_1003 0.87 +0.6
1,144,143 + PP_1003 0.89 +0.7
1,144,144 - PP_1003 0.90 -1.4
1,144,260 + -0.2
1,144,261 - +1.1
1,144,269 + +0.1
1,144,478 + PP_1004 0.50 +1.7
1,144,479 - PP_1004 0.50 -0.3
1,144,630 + PP_1004 0.86 +0.2
1,144,631 - PP_1004 0.87 -0.5
1,144,631 - PP_1004 0.87 -0.2
1,144,677 + +0.1
1,144,698 + +0.3
1,144,698 + -0.1
1,144,698 + +0.6
1,144,699 - +0.6
1,144,699 - +0.1
1,144,699 - +0.3
1,144,765 + -0.5
1,145,190 + PP_1005 0.76 +0.6
1,145,190 + PP_1005 0.76 +0.3
1,145,191 - PP_1005 0.76 -0.5
1,145,191 - PP_1005 0.76 +0.3
1,145,191 - PP_1005 0.76 +0.9
1,145,191 - PP_1005 0.76 +0.8
1,145,191 - PP_1005 0.76 +1.1
1,145,194 + PP_1005 0.76 +0.9
1,145,195 - PP_1005 0.77 -0.0
1,145,195 - PP_1005 0.77 +1.3
1,145,361 - -0.3
1,145,364 + -0.1
1,145,365 - -0.2
1,145,365 - -0.2
1,145,365 - -0.3
1,145,407 - -0.3
1,145,407 - +0.4
1,145,467 + +0.4
1,145,498 - +0.4
1,145,498 - +1.0
1,145,575 - -0.6
1,145,602 - -1.4
1,145,602 - -1.8
1,145,622 + +0.1
1,145,623 - -0.6
1,145,623 - -0.7
1,145,623 - +0.1
1,145,623 - +0.1
1,145,623 - +1.1
1,145,661 + +0.9
1,145,661 + -0.7
1,145,661 + -0.3
1,145,661 + -2.2
1,145,661 + -0.7
1,145,662 - +0.3
1,145,662 - -0.2
1,145,662 - -0.4
1,145,662 - -0.5
1,145,688 + +0.3
1,145,689 - +0.9
1,145,713 + -0.1
1,145,713 + +1.4
1,145,714 - -0.6
1,145,731 - -0.3
1,145,731 - -2.2
1,145,793 + PP_1006 0.12 +1.1
1,145,793 + PP_1006 0.12 -2.1
1,145,794 - PP_1006 0.12 +0.4
1,145,822 + PP_1006 0.13 -0.4
1,145,822 + PP_1006 0.13 -3.3
1,145,822 + PP_1006 0.13 -0.3
1,145,822 + PP_1006 0.13 +1.1
1,145,880 + PP_1006 0.16 +0.4
1,145,880 + PP_1006 0.16 -0.4
1,145,880 + PP_1006 0.16 +0.2
1,145,880 + PP_1006 0.16 -0.2
1,145,880 + PP_1006 0.16 -0.8
1,145,880 + PP_1006 0.16 +0.3
1,145,880 + PP_1006 0.16 -2.9
1,145,880 + PP_1006 0.16 -0.6
1,145,881 - PP_1006 0.16 -0.2
1,145,881 - PP_1006 0.16 +0.3
1,145,881 - PP_1006 0.16 -0.4
1,145,881 - PP_1006 0.16 -1.9
1,145,881 - PP_1006 0.16 -0.5
1,145,881 - PP_1006 0.16 -0.6
1,145,881 - PP_1006 0.16 -0.1
1,145,881 - PP_1006 0.16 -0.2
1,145,886 + PP_1006 0.16 -0.8
1,145,886 + PP_1006 0.16 +0.0
1,145,886 + PP_1006 0.16 +0.8
1,145,887 - PP_1006 0.16 -0.2
1,145,887 - PP_1006 0.16 +1.2
1,145,907 + PP_1006 0.17 -0.4
1,145,907 + PP_1006 0.17 -1.0
1,146,054 + PP_1006 0.22 -0.4
1,146,054 + PP_1006 0.22 +0.6
1,146,063 + PP_1006 0.23 +0.1
1,146,063 + PP_1006 0.23 -0.8
1,146,064 - PP_1006 0.23 -0.5
1,146,064 - PP_1006 0.23 +0.2
1,146,148 + PP_1006 0.26 -0.5
1,146,149 - PP_1006 0.26 +1.1
1,146,198 + PP_1006 0.28 -1.7
1,146,198 + PP_1006 0.28 +0.3
1,146,198 + PP_1006 0.28 +0.0
1,146,198 + PP_1006 0.28 -0.8
1,146,198 + PP_1006 0.28 -0.1
1,146,199 - PP_1006 0.28 -0.6
1,146,199 - PP_1006 0.28 +0.6
1,146,199 - PP_1006 0.28 +1.0
1,146,199 - PP_1006 0.28 -0.3
1,146,199 - PP_1006 0.28 +0.3
1,146,237 + PP_1006 0.29 +0.2
1,146,238 - PP_1006 0.30 +0.5
1,146,238 - PP_1006 0.30 -0.0
1,146,238 - PP_1006 0.30 +1.1
1,146,255 + PP_1006 0.30 +0.5
1,146,255 + PP_1006 0.30 -0.6
1,146,256 - PP_1006 0.30 -1.9
1,146,256 - PP_1006 0.30 +1.6
1,146,256 - PP_1006 0.30 -3.4
1,146,274 - PP_1006 0.31 +0.9
1,146,274 - PP_1006 0.31 -0.6

Or see this region's nucleotide sequence