Strain Fitness in Pseudomonas simiae WCS417 around PS417_04485

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_04475 and PS417_04480 are separated by 57 nucleotidesPS417_04480 and PS417_04485 are separated by 182 nucleotidesPS417_04485 and PS417_04490 are separated by 150 nucleotides PS417_04475: PS417_04475 - hypothetical protein, at 991,354 to 991,941 _04475 PS417_04480: PS417_04480 - hypothetical protein, at 991,999 to 992,208 _04480 PS417_04485: PS417_04485 - hypothetical protein, at 992,391 to 992,648 _04485 PS417_04490: PS417_04490 - glycerol acyltransferase, at 992,799 to 993,962 _04490 Position (kb) 992 993Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 991.589 kb on + strand, within PS417_04475at 991.589 kb on + strand, within PS417_04475at 991.590 kb on - strand, within PS417_04475at 991.702 kb on + strand, within PS417_04475at 991.703 kb on - strand, within PS417_04475at 991.726 kb on + strand, within PS417_04475at 991.726 kb on + strand, within PS417_04475at 991.726 kb on + strand, within PS417_04475at 991.727 kb on - strand, within PS417_04475at 992.096 kb on + strand, within PS417_04480at 992.178 kb on - strand, within PS417_04480at 992.219 kb on + strandat 992.249 kb on + strandat 992.278 kb on + strandat 992.286 kb on - strandat 992.286 kb on - strandat 992.291 kb on - strandat 992.316 kb on + strandat 992.335 kb on - strandat 992.377 kb on + strandat 992.378 kb on - strandat 992.429 kb on - strand, within PS417_04485at 992.429 kb on - strand, within PS417_04485at 992.431 kb on + strand, within PS417_04485at 992.431 kb on + strand, within PS417_04485at 992.432 kb on - strand, within PS417_04485at 992.432 kb on - strand, within PS417_04485at 992.432 kb on - strand, within PS417_04485at 992.554 kb on + strand, within PS417_04485at 992.555 kb on - strand, within PS417_04485at 992.555 kb on - strand, within PS417_04485at 992.726 kb on + strandat 992.727 kb on - strandat 992.800 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
991,589 + PS417_04475 0.40 +0.3
991,589 + PS417_04475 0.40 -0.5
991,590 - PS417_04475 0.40 +0.7
991,702 + PS417_04475 0.59 +1.5
991,703 - PS417_04475 0.59 +0.0
991,726 + PS417_04475 0.63 +0.2
991,726 + PS417_04475 0.63 -0.5
991,726 + PS417_04475 0.63 -0.5
991,727 - PS417_04475 0.63 +1.0
992,096 + PS417_04480 0.46 -2.2
992,178 - PS417_04480 0.85 +2.3
992,219 + -0.9
992,249 + +0.2
992,278 + +1.0
992,286 - +0.0
992,286 - -0.6
992,291 - +1.5
992,316 + +0.3
992,335 - +0.8
992,377 + +1.3
992,378 - -0.4
992,429 - PS417_04485 0.15 -0.2
992,429 - PS417_04485 0.15 +4.0
992,431 + PS417_04485 0.16 +0.2
992,431 + PS417_04485 0.16 +1.7
992,432 - PS417_04485 0.16 -0.5
992,432 - PS417_04485 0.16 +1.3
992,432 - PS417_04485 0.16 +0.3
992,554 + PS417_04485 0.63 +1.2
992,555 - PS417_04485 0.64 +0.3
992,555 - PS417_04485 0.64 -0.4
992,726 + +0.7
992,727 - -0.3
992,800 + -0.6

Or see this region's nucleotide sequence