Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03650 and PS417_03655 overlap by 4 nucleotides PS417_03655 and PS417_03660 overlap by 4 nucleotides PS417_03660 and PS417_03665 overlap by 8 nucleotides
PS417_03650: PS417_03650 - FAD-dependent oxidoreductase, at 827,137 to 828,384
_03650
PS417_03655: PS417_03655 - short-chain dehydrogenase, at 828,381 to 829,163
_03655
PS417_03660: PS417_03660 - transcriptional regulator, at 829,160 to 829,582
_03660
PS417_03665: PS417_03665 - deoxyribodipyrimidine photolyase, at 829,575 to 831,020
_03665
Position (kb) 829
830 Strain fitness (log2 ratio) -1
0
1 at 828.173 kb on - strand, within PS417_03650 at 828.194 kb on + strand, within PS417_03650 at 828.216 kb on + strand, within PS417_03650 at 828.236 kb on + strand, within PS417_03650 at 828.243 kb on + strand, within PS417_03650 at 828.273 kb on + strand at 828.273 kb on + strand at 828.336 kb on - strand at 828.384 kb on + strand at 828.384 kb on + strand at 828.384 kb on + strand at 828.385 kb on - strand at 828.385 kb on - strand at 828.385 kb on - strand at 828.683 kb on - strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.815 kb on - strand, within PS417_03655 at 829.016 kb on - strand, within PS417_03655 at 829.218 kb on + strand, within PS417_03660 at 829.218 kb on + strand, within PS417_03660 at 829.219 kb on - strand, within PS417_03660 at 829.242 kb on + strand, within PS417_03660 at 829.243 kb on - strand, within PS417_03660 at 829.258 kb on - strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.438 kb on - strand, within PS417_03660 at 829.825 kb on + strand, within PS417_03665 at 829.826 kb on - strand, within PS417_03665 at 829.826 kb on - strand, within PS417_03665 at 830.167 kb on + strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.353 kb on + strand, within PS417_03665 at 830.551 kb on + strand, within PS417_03665
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 828,173 - PS417_03650 0.83 +0.0 828,194 + PS417_03650 0.85 -0.1 828,216 + PS417_03650 0.86 -0.7 828,236 + PS417_03650 0.88 +0.3 828,243 + PS417_03650 0.89 +1.0 828,273 + +0.3 828,273 + -1.6 828,336 - -0.1 828,384 + +0.3 828,384 + -0.0 828,384 + -0.5 828,385 - -1.6 828,385 - +0.1 828,385 - +0.8 828,683 - PS417_03655 0.39 +0.0 828,709 + PS417_03655 0.42 -1.7 828,709 + PS417_03655 0.42 +0.0 828,709 + PS417_03655 0.42 -1.0 828,815 - PS417_03655 0.55 -0.2 829,016 - PS417_03655 0.81 -1.0 829,218 + PS417_03660 0.14 -0.1 829,218 + PS417_03660 0.14 -1.2 829,219 - PS417_03660 0.14 -0.4 829,242 + PS417_03660 0.19 -0.2 829,243 - PS417_03660 0.20 +0.0 829,258 - PS417_03660 0.23 +0.7 829,422 + PS417_03660 0.62 +0.6 829,422 + PS417_03660 0.62 +0.3 829,422 + PS417_03660 0.62 +1.0 829,438 - PS417_03660 0.66 -0.1 829,825 + PS417_03665 0.17 +0.3 829,826 - PS417_03665 0.17 +0.1 829,826 - PS417_03665 0.17 +0.0 830,167 + PS417_03665 0.41 -1.0 830,351 - PS417_03665 0.54 +1.0 830,351 - PS417_03665 0.54 +1.6 830,351 - PS417_03665 0.54 -0.5 830,351 - PS417_03665 0.54 -0.2 830,353 + PS417_03665 0.54 -0.7 830,551 + PS417_03665 0.67 +0.1
Or see this region's nucleotide sequence