Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27265 and PS417_27270 are separated by 161 nucleotides PS417_27270 and PS417_27275 are separated by 3 nucleotides PS417_27275 and PS417_27280 overlap by 8 nucleotides
PS417_27265: PS417_27265 - iron ABC transporter substrate-binding protein, at 5,885,548 to 5,886,552
_27265
PS417_27270: PS417_27270 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 5,886,714 to 5,887,937
_27270
PS417_27275: PS417_27275 - hypothetical protein, at 5,887,941 to 5,888,426
_27275
PS417_27280: PS417_27280 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 5,888,419 to 5,889,606
_27280
Position (kb) 5886
5887
5888 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 5885.888 kb on + strand, within PS417_27265 at 5885.889 kb on - strand, within PS417_27265 at 5885.889 kb on - strand, within PS417_27265 at 5885.889 kb on - strand, within PS417_27265 at 5885.889 kb on - strand, within PS417_27265 at 5885.891 kb on + strand, within PS417_27265 at 5885.891 kb on + strand, within PS417_27265 at 5885.891 kb on + strand, within PS417_27265 at 5885.892 kb on - strand, within PS417_27265 at 5885.892 kb on - strand, within PS417_27265 at 5885.895 kb on + strand, within PS417_27265 at 5885.895 kb on + strand, within PS417_27265 at 5886.060 kb on - strand, within PS417_27265 at 5886.122 kb on + strand, within PS417_27265 at 5886.122 kb on + strand, within PS417_27265 at 5886.122 kb on + strand, within PS417_27265 at 5886.123 kb on - strand, within PS417_27265 at 5886.201 kb on + strand, within PS417_27265 at 5886.202 kb on - strand at 5886.202 kb on - strand, within PS417_27265 at 5886.419 kb on + strand, within PS417_27265 at 5886.419 kb on + strand, within PS417_27265 at 5886.420 kb on - strand, within PS417_27265 at 5886.420 kb on - strand, within PS417_27265 at 5886.464 kb on + strand at 5886.765 kb on + strand at 5887.943 kb on - strand at 5887.976 kb on - strand at 5888.048 kb on - strand, within PS417_27275 at 5888.048 kb on - strand, within PS417_27275 at 5888.116 kb on + strand, within PS417_27275 at 5888.117 kb on - strand, within PS417_27275 at 5888.176 kb on + strand, within PS417_27275 at 5888.176 kb on + strand, within PS417_27275 at 5888.177 kb on - strand, within PS417_27275 at 5888.212 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.264 kb on - strand, within PS417_27275 at 5888.275 kb on + strand, within PS417_27275 at 5888.275 kb on + strand, within PS417_27275 at 5888.353 kb on + strand, within PS417_27275 at 5888.354 kb on - strand, within PS417_27275 at 5888.420 kb on + strand at 5888.421 kb on - strand at 5888.421 kb on - strand at 5888.421 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,885,888 + PS417_27265 0.34 -0.1 5,885,889 - PS417_27265 0.34 -1.6 5,885,889 - PS417_27265 0.34 -0.3 5,885,889 - PS417_27265 0.34 -0.3 5,885,889 - PS417_27265 0.34 -0.1 5,885,891 + PS417_27265 0.34 -0.0 5,885,891 + PS417_27265 0.34 -0.3 5,885,891 + PS417_27265 0.34 -0.7 5,885,892 - PS417_27265 0.34 +0.5 5,885,892 - PS417_27265 0.34 +1.3 5,885,895 + PS417_27265 0.35 +7.1 5,885,895 + PS417_27265 0.35 -0.4 5,886,060 - PS417_27265 0.51 -0.3 5,886,122 + PS417_27265 0.57 -1.1 5,886,122 + PS417_27265 0.57 +0.6 5,886,122 + PS417_27265 0.57 +0.3 5,886,123 - PS417_27265 0.57 -0.7 5,886,201 + PS417_27265 0.65 +1.9 5,886,202 - +1.0 5,886,202 - PS417_27265 0.65 +0.9 5,886,419 + PS417_27265 0.87 +1.4 5,886,419 + PS417_27265 0.87 -0.3 5,886,420 - PS417_27265 0.87 +0.3 5,886,420 - PS417_27265 0.87 +0.9 5,886,464 + +0.3 5,886,765 + -1.2 5,887,943 - -0.8 5,887,976 - -0.8 5,888,048 - PS417_27275 0.22 +0.3 5,888,048 - PS417_27275 0.22 -1.1 5,888,116 + PS417_27275 0.36 -0.6 5,888,117 - PS417_27275 0.36 -0.9 5,888,176 + PS417_27275 0.48 -0.8 5,888,176 + PS417_27275 0.48 -0.6 5,888,177 - PS417_27275 0.49 -0.7 5,888,212 + PS417_27275 0.56 +0.0 5,888,263 + PS417_27275 0.66 -0.5 5,888,263 + PS417_27275 0.66 +0.2 5,888,263 + PS417_27275 0.66 +1.8 5,888,263 + PS417_27275 0.66 -0.7 5,888,264 - PS417_27275 0.66 -0.8 5,888,275 + PS417_27275 0.69 +0.3 5,888,275 + PS417_27275 0.69 -0.2 5,888,353 + PS417_27275 0.85 +1.4 5,888,354 - PS417_27275 0.85 -1.1 5,888,420 + +0.5 5,888,421 - -1.5 5,888,421 - +0.9 5,888,421 - -0.3
Or see this region's nucleotide sequence