Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20010 and PS417_20015 are separated by 55 nucleotides PS417_20015 and PS417_20020 are separated by 42 nucleotides PS417_20020 and PS417_20025 are separated by 2 nucleotides PS417_20025 and PS417_20030 overlap by 4 nucleotides
PS417_20010: PS417_20010 - MFS transporter, at 4,344,308 to 4,345,516
_20010
PS417_20015: PS417_20015 - MarR family transcriptional regulator, at 4,345,572 to 4,345,976
_20015
PS417_20020: PS417_20020 - cobalamin synthase, at 4,346,019 to 4,346,747
_20020
PS417_20025: PS417_20025 - alpha-ribazole phosphatase, at 4,346,750 to 4,347,325
_20025
PS417_20030: PS417_20030 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 4,347,322 to 4,348,377
_20030
Position (kb) 4346
4347 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4345.292 kb on - strand, within PS417_20010 at 4345.479 kb on - strand at 4345.522 kb on - strand at 4345.541 kb on - strand at 4345.542 kb on + strand at 4345.552 kb on + strand at 4345.985 kb on + strand at 4345.986 kb on - strand at 4345.986 kb on - strand at 4345.986 kb on - strand at 4345.988 kb on - strand at 4346.127 kb on + strand, within PS417_20020 at 4346.128 kb on - strand, within PS417_20020 at 4346.128 kb on - strand, within PS417_20020 at 4346.128 kb on - strand, within PS417_20020 at 4346.274 kb on + strand, within PS417_20020 at 4346.274 kb on + strand, within PS417_20020 at 4346.274 kb on + strand, within PS417_20020 at 4346.274 kb on + strand, within PS417_20020 at 4346.275 kb on - strand, within PS417_20020 at 4346.275 kb on - strand, within PS417_20020 at 4346.275 kb on - strand, within PS417_20020 at 4346.275 kb on - strand, within PS417_20020 at 4346.275 kb on - strand, within PS417_20020 at 4346.275 kb on - strand, within PS417_20020 at 4346.278 kb on + strand, within PS417_20020 at 4346.278 kb on + strand, within PS417_20020 at 4346.279 kb on - strand, within PS417_20020 at 4346.289 kb on - strand, within PS417_20020 at 4346.864 kb on + strand, within PS417_20025 at 4346.917 kb on - strand, within PS417_20025 at 4347.582 kb on + strand, within PS417_20030 at 4347.583 kb on - strand, within PS417_20030 at 4347.583 kb on - strand, within PS417_20030 at 4347.709 kb on + strand, within PS417_20030
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,345,292 - PS417_20010 0.81 +0.1 4,345,479 - +0.6 4,345,522 - -0.0 4,345,541 - -0.4 4,345,542 + +0.2 4,345,552 + +0.2 4,345,985 + -1.0 4,345,986 - +0.3 4,345,986 - +0.5 4,345,986 - -0.5 4,345,988 - -1.3 4,346,127 + PS417_20020 0.15 -0.9 4,346,128 - PS417_20020 0.15 -0.0 4,346,128 - PS417_20020 0.15 +0.9 4,346,128 - PS417_20020 0.15 -0.9 4,346,274 + PS417_20020 0.35 +0.4 4,346,274 + PS417_20020 0.35 -1.2 4,346,274 + PS417_20020 0.35 -0.4 4,346,274 + PS417_20020 0.35 -1.7 4,346,275 - PS417_20020 0.35 -0.6 4,346,275 - PS417_20020 0.35 -1.0 4,346,275 - PS417_20020 0.35 -2.8 4,346,275 - PS417_20020 0.35 -0.5 4,346,275 - PS417_20020 0.35 -1.9 4,346,275 - PS417_20020 0.35 -0.9 4,346,278 + PS417_20020 0.36 -0.6 4,346,278 + PS417_20020 0.36 -0.6 4,346,279 - PS417_20020 0.36 -0.4 4,346,289 - PS417_20020 0.37 -1.5 4,346,864 + PS417_20025 0.20 -0.6 4,346,917 - PS417_20025 0.29 +0.2 4,347,582 + PS417_20030 0.25 +0.1 4,347,583 - PS417_20030 0.25 +0.6 4,347,583 - PS417_20030 0.25 -0.3 4,347,709 + PS417_20030 0.37 -0.9
Or see this region's nucleotide sequence