Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00860 and PS417_00865 overlap by 4 nucleotides PS417_00865 and PS417_00870 overlap by 4 nucleotides PS417_00870 and PS417_00875 are separated by 527 nucleotides
PS417_00860: PS417_00860 - hypothetical protein, at 191,763 to 194,669
_00860
PS417_00865: PS417_00865 - hypothetical protein, at 194,666 to 194,938
_00865
PS417_00870: PS417_00870 - hypothetical protein, at 194,935 to 195,219
_00870
PS417_00875: PS417_00875 - hypothetical protein, at 195,747 to 196,052
_00875
Position (kb) 194
195 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 194.207 kb on - strand, within PS417_00860 at 194.536 kb on + strand at 194.536 kb on + strand at 194.537 kb on - strand at 194.537 kb on - strand at 194.739 kb on + strand, within PS417_00865 at 194.740 kb on - strand, within PS417_00865 at 194.740 kb on - strand, within PS417_00865 at 194.741 kb on + strand, within PS417_00865 at 194.741 kb on + strand, within PS417_00865 at 194.742 kb on - strand, within PS417_00865 at 194.742 kb on - strand, within PS417_00865 at 194.742 kb on - strand, within PS417_00865 at 195.121 kb on + strand, within PS417_00870 at 195.121 kb on + strand, within PS417_00870 at 195.122 kb on - strand, within PS417_00870 at 195.172 kb on - strand, within PS417_00870 at 195.272 kb on - strand at 195.309 kb on + strand at 195.309 kb on + strand at 195.309 kb on + strand at 195.309 kb on + strand at 195.310 kb on - strand at 195.310 kb on - strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.375 kb on - strand at 195.375 kb on - strand at 195.375 kb on - strand at 195.429 kb on + strand at 195.430 kb on - strand at 195.430 kb on - strand at 195.572 kb on + strand at 195.573 kb on - strand at 195.702 kb on - strand at 195.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 194,207 - PS417_00860 0.84 +0.1 194,536 + -0.5 194,536 + +1.2 194,537 - +5.9 194,537 - -0.3 194,739 + PS417_00865 0.27 +0.4 194,740 - PS417_00865 0.27 +5.8 194,740 - PS417_00865 0.27 -0.0 194,741 + PS417_00865 0.27 -1.1 194,741 + PS417_00865 0.27 -0.1 194,742 - PS417_00865 0.28 -0.1 194,742 - PS417_00865 0.28 +0.4 194,742 - PS417_00865 0.28 +1.2 195,121 + PS417_00870 0.65 +0.2 195,121 + PS417_00870 0.65 +0.0 195,122 - PS417_00870 0.66 +0.3 195,172 - PS417_00870 0.83 +0.4 195,272 - +0.1 195,309 + -1.1 195,309 + -0.2 195,309 + -0.5 195,309 + +1.5 195,310 - +0.3 195,310 - +0.0 195,374 + -0.1 195,374 + +0.4 195,374 + -1.9 195,374 + +0.5 195,374 + -1.0 195,374 + -0.0 195,374 + -1.7 195,374 + -0.9 195,374 + -0.5 195,375 - -0.6 195,375 - +0.8 195,375 - -0.3 195,429 + +0.5 195,430 - +0.7 195,430 - -1.2 195,572 + +0.5 195,573 - +1.3 195,702 - -0.2 195,708 - -1.1
Or see this region's nucleotide sequence