Strain Fitness in Pseudomonas putida KT2440 around PP_3407

Experiment: Growth at 34C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3405 and PP_3406 are separated by 124 nucleotidesPP_3406 and PP_3407 overlap by 4 nucleotidesPP_3407 and PP_3408 are separated by 406 nucleotides PP_3405: PP_3405 - conserved membrane protein of unknown function, at 3,856,193 to 3,856,822 _3405 PP_3406: PP_3406 - Acetyltransferase, GNAT family, at 3,856,947 to 3,857,426 _3406 PP_3407: PP_3407 - conserved protein of unknown function, at 3,857,423 to 3,857,653 _3407 PP_3408: PP_3408 - cobalt transporter subunit A, at 3,858,060 to 3,858,746 _3408 Position (kb) 3857 3858Strain fitness (log2 ratio) -2 -1 0 1at 3856.554 kb on + strand, within PP_3405at 3856.554 kb on + strand, within PP_3405at 3856.594 kb on - strand, within PP_3405at 3856.616 kb on + strand, within PP_3405at 3856.616 kb on + strand, within PP_3405at 3856.617 kb on - strand, within PP_3405at 3856.673 kb on - strand, within PP_3405at 3856.764 kb on - strandat 3856.764 kb on - strandat 3856.834 kb on + strandat 3856.837 kb on - strandat 3856.837 kb on - strandat 3856.904 kb on - strandat 3856.915 kb on + strandat 3856.916 kb on - strandat 3857.148 kb on + strand, within PP_3406at 3857.149 kb on - strand, within PP_3406at 3857.154 kb on + strand, within PP_3406at 3857.154 kb on + strand, within PP_3406at 3857.155 kb on - strand, within PP_3406at 3857.155 kb on - strand, within PP_3406at 3857.155 kb on - strand, within PP_3406at 3857.160 kb on + strand, within PP_3406at 3857.161 kb on - strand, within PP_3406at 3857.190 kb on + strand, within PP_3406at 3857.190 kb on + strand, within PP_3406at 3857.190 kb on + strand, within PP_3406at 3857.190 kb on + strand, within PP_3406at 3857.191 kb on - strand, within PP_3406at 3857.205 kb on + strand, within PP_3406at 3857.205 kb on + strand, within PP_3406at 3857.205 kb on + strand, within PP_3406at 3857.205 kb on + strand, within PP_3406at 3857.205 kb on + strand, within PP_3406at 3857.206 kb on - strand, within PP_3406at 3857.206 kb on - strand, within PP_3406at 3857.341 kb on - strand, within PP_3406at 3857.341 kb on - strand, within PP_3406at 3857.513 kb on + strand, within PP_3407at 3857.513 kb on + strand, within PP_3407at 3857.549 kb on + strand, within PP_3407at 3857.549 kb on + strand, within PP_3407at 3857.550 kb on - strand, within PP_3407at 3857.652 kb on - strandat 3857.670 kb on + strandat 3857.685 kb on + strandat 3857.686 kb on - strandat 3857.689 kb on - strandat 3857.833 kb on - strandat 3857.924 kb on - strandat 3857.968 kb on - strandat 3857.968 kb on - strandat 3858.052 kb on + strandat 3858.495 kb on - strand, within PP_3408at 3858.592 kb on + strand, within PP_3408at 3858.592 kb on + strand, within PP_3408at 3858.592 kb on + strand, within PP_3408at 3858.593 kb on - strand, within PP_3408

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
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3,856,554 + PP_3405 0.57 -0.7
3,856,554 + PP_3405 0.57 +0.3
3,856,594 - PP_3405 0.64 -1.9
3,856,616 + PP_3405 0.67 -0.6
3,856,616 + PP_3405 0.67 -0.3
3,856,617 - PP_3405 0.67 -0.7
3,856,673 - PP_3405 0.76 -0.0
3,856,764 - +0.6
3,856,764 - +0.7
3,856,834 + -1.6
3,856,837 - +1.3
3,856,837 - +0.9
3,856,904 - -2.7
3,856,915 + -0.0
3,856,916 - +0.1
3,857,148 + PP_3406 0.42 +1.6
3,857,149 - PP_3406 0.42 +1.3
3,857,154 + PP_3406 0.43 -1.0
3,857,154 + PP_3406 0.43 +0.1
3,857,155 - PP_3406 0.43 -1.4
3,857,155 - PP_3406 0.43 +0.9
3,857,155 - PP_3406 0.43 +0.3
3,857,160 + PP_3406 0.44 -1.1
3,857,161 - PP_3406 0.45 -1.0
3,857,190 + PP_3406 0.51 +0.5
3,857,190 + PP_3406 0.51 -1.0
3,857,190 + PP_3406 0.51 +0.2
3,857,190 + PP_3406 0.51 +0.7
3,857,191 - PP_3406 0.51 +0.2
3,857,205 + PP_3406 0.54 -1.0
3,857,205 + PP_3406 0.54 -0.1
3,857,205 + PP_3406 0.54 -0.3
3,857,205 + PP_3406 0.54 +0.2
3,857,205 + PP_3406 0.54 +0.1
3,857,206 - PP_3406 0.54 +0.6
3,857,206 - PP_3406 0.54 -2.3
3,857,341 - PP_3406 0.82 +0.6
3,857,341 - PP_3406 0.82 +1.0
3,857,513 + PP_3407 0.39 +1.6
3,857,513 + PP_3407 0.39 -1.7
3,857,549 + PP_3407 0.55 +0.3
3,857,549 + PP_3407 0.55 +0.3
3,857,550 - PP_3407 0.55 +0.5
3,857,652 - +0.2
3,857,670 + +0.2
3,857,685 + -0.1
3,857,686 - -0.8
3,857,689 - -0.4
3,857,833 - +1.1
3,857,924 - -0.2
3,857,968 - -1.7
3,857,968 - -1.5
3,858,052 + -1.0
3,858,495 - PP_3408 0.63 -1.6
3,858,592 + PP_3408 0.77 +1.0
3,858,592 + PP_3408 0.77 -1.6
3,858,592 + PP_3408 0.77 +0.9
3,858,593 - PP_3408 0.78 +0.7

Or see this region's nucleotide sequence