Strain Fitness in Pseudomonas putida KT2440 around PP_3073

Experiment: Growth at 34C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3071 and PP_3072 are separated by 92 nucleotidesPP_3072 and PP_3073 are separated by 55 nucleotidesPP_3073 and PP_3074 are separated by 10 nucleotides PP_3071: PP_3071 - acetoacetyl-coenzyme A synthetase, at 3,453,938 to 3,455,890 _3071 PP_3072: PP_3072 - Ecotin, at 3,455,983 to 3,456,462 _3072 PP_3073: PP_3073 - 3-hydroxybutyrate dehydrogenase, at 3,456,518 to 3,457,288 _3073 PP_3074: PP_3074 - D-beta-hydroxybutyrate permease, at 3,457,299 to 3,458,690 _3074 Position (kb) 3456 3457 3458Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3455.785 kb on - strandat 3455.785 kb on - strandat 3455.805 kb on + strandat 3455.805 kb on + strandat 3455.984 kb on + strandat 3455.984 kb on + strandat 3455.985 kb on - strandat 3455.989 kb on + strandat 3455.989 kb on + strandat 3455.989 kb on + strandat 3455.989 kb on + strandat 3455.990 kb on - strandat 3455.990 kb on - strandat 3455.990 kb on - strandat 3455.990 kb on - strandat 3456.059 kb on + strand, within PP_3072at 3456.059 kb on + strand, within PP_3072at 3456.059 kb on + strand, within PP_3072at 3456.059 kb on + strand, within PP_3072at 3456.059 kb on + strand, within PP_3072at 3456.059 kb on + strand, within PP_3072at 3456.059 kb on + strand, within PP_3072at 3456.060 kb on - strand, within PP_3072at 3456.060 kb on - strand, within PP_3072at 3456.060 kb on - strand, within PP_3072at 3456.060 kb on - strand, within PP_3072at 3456.060 kb on - strand, within PP_3072at 3456.087 kb on - strand, within PP_3072at 3456.087 kb on - strand, within PP_3072at 3456.197 kb on + strand, within PP_3072at 3456.197 kb on + strand, within PP_3072at 3456.197 kb on + strand, within PP_3072at 3456.198 kb on - strand, within PP_3072at 3456.198 kb on - strand, within PP_3072at 3456.198 kb on - strand, within PP_3072at 3456.301 kb on - strand, within PP_3072at 3456.302 kb on + strand, within PP_3072at 3456.302 kb on + strand, within PP_3072at 3456.596 kb on + strand, within PP_3073at 3456.597 kb on - strand, within PP_3073at 3456.749 kb on + strand, within PP_3073at 3456.750 kb on - strand, within PP_3073at 3456.750 kb on - strand, within PP_3073at 3456.750 kb on - strand, within PP_3073at 3456.834 kb on + strand, within PP_3073at 3456.834 kb on + strand, within PP_3073at 3456.835 kb on - strand, within PP_3073at 3456.835 kb on - strand, within PP_3073at 3457.021 kb on + strand, within PP_3073at 3457.217 kb on + strandat 3457.218 kb on - strandat 3457.300 kb on + strandat 3457.301 kb on - strandat 3457.318 kb on + strandat 3457.384 kb on + strandat 3457.384 kb on + strandat 3457.384 kb on + strandat 3457.384 kb on + strandat 3457.385 kb on - strandat 3457.385 kb on - strandat 3457.385 kb on - strandat 3457.706 kb on - strand, within PP_3074at 3457.778 kb on + strand, within PP_3074at 3457.779 kb on - strand, within PP_3074at 3458.102 kb on - strand, within PP_3074

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
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3,455,785 - -0.5
3,455,785 - +0.6
3,455,805 + -0.2
3,455,805 + -3.1
3,455,984 + -0.7
3,455,984 + -1.9
3,455,985 - +0.2
3,455,989 + +0.1
3,455,989 + -0.9
3,455,989 + +0.2
3,455,989 + +0.8
3,455,990 - -0.3
3,455,990 - -0.4
3,455,990 - -1.3
3,455,990 - -1.4
3,456,059 + PP_3072 0.16 +0.7
3,456,059 + PP_3072 0.16 +0.7
3,456,059 + PP_3072 0.16 +1.0
3,456,059 + PP_3072 0.16 +0.2
3,456,059 + PP_3072 0.16 -0.1
3,456,059 + PP_3072 0.16 -0.0
3,456,059 + PP_3072 0.16 +0.1
3,456,060 - PP_3072 0.16 -0.9
3,456,060 - PP_3072 0.16 +0.4
3,456,060 - PP_3072 0.16 +0.2
3,456,060 - PP_3072 0.16 +0.4
3,456,060 - PP_3072 0.16 -0.8
3,456,087 - PP_3072 0.22 +0.1
3,456,087 - PP_3072 0.22 -0.0
3,456,197 + PP_3072 0.45 +1.1
3,456,197 + PP_3072 0.45 +0.2
3,456,197 + PP_3072 0.45 +0.5
3,456,198 - PP_3072 0.45 +0.3
3,456,198 - PP_3072 0.45 -0.0
3,456,198 - PP_3072 0.45 +0.7
3,456,301 - PP_3072 0.66 +0.4
3,456,302 + PP_3072 0.66 -0.4
3,456,302 + PP_3072 0.66 -1.2
3,456,596 + PP_3073 0.10 +0.2
3,456,597 - PP_3073 0.10 +0.9
3,456,749 + PP_3073 0.30 -0.2
3,456,750 - PP_3073 0.30 +0.9
3,456,750 - PP_3073 0.30 +1.6
3,456,750 - PP_3073 0.30 +0.4
3,456,834 + PP_3073 0.41 +0.6
3,456,834 + PP_3073 0.41 +0.3
3,456,835 - PP_3073 0.41 +0.5
3,456,835 - PP_3073 0.41 +0.2
3,457,021 + PP_3073 0.65 +1.5
3,457,217 + +0.1
3,457,218 - -0.3
3,457,300 + +0.5
3,457,301 - +1.4
3,457,318 + +0.1
3,457,384 + +0.5
3,457,384 + +2.3
3,457,384 + +0.2
3,457,384 + +0.4
3,457,385 - -0.4
3,457,385 - -1.4
3,457,385 - +1.1
3,457,706 - PP_3074 0.29 +0.3
3,457,778 + PP_3074 0.34 -2.1
3,457,779 - PP_3074 0.34 +1.2
3,458,102 - PP_3074 0.58 +1.3

Or see this region's nucleotide sequence