Strain Fitness in Pseudomonas putida KT2440 around PP_1623

Experiment: Growth at 34C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1622 and PP_1623 are separated by 108 nucleotidesPP_1623 and PP_1624 are separated by 474 nucleotides PP_1622: PP_1622 - metallopeptidase, M23B subfamily, at 1,817,859 to 1,818,647 _1622 PP_1623: PP_1623 - RNA polymerase, sigma S (sigma 38) factor, at 1,818,756 to 1,819,763 _1623 PP_1624: PP_1624 - Group II intron-encoding maturase, at 1,820,238 to 1,821,659 _1624 Position (kb) 1818 1819 1820Strain fitness (log2 ratio) -2 -1 0 1 2at 1818.256 kb on + strandat 1818.307 kb on + strand, within PP_1622at 1818.308 kb on - strand, within PP_1622at 1818.654 kb on + strandat 1818.654 kb on + strandat 1818.655 kb on - strandat 1818.676 kb on + strandat 1818.676 kb on + strandat 1818.676 kb on + strandat 1818.677 kb on - strandat 1818.751 kb on + strandat 1818.751 kb on + strandat 1818.751 kb on + strandat 1818.751 kb on + strandat 1818.752 kb on - strandat 1818.752 kb on - strandat 1818.862 kb on + strand, within PP_1623at 1818.863 kb on - strand, within PP_1623at 1818.863 kb on - strand, within PP_1623at 1818.915 kb on + strand, within PP_1623at 1818.915 kb on + strand, within PP_1623at 1818.915 kb on + strand, within PP_1623at 1818.916 kb on - strand, within PP_1623at 1818.954 kb on + strand, within PP_1623at 1818.954 kb on + strand, within PP_1623at 1818.954 kb on + strand, within PP_1623at 1818.955 kb on - strand, within PP_1623at 1818.955 kb on - strand, within PP_1623at 1818.955 kb on - strandat 1819.098 kb on + strand, within PP_1623at 1819.206 kb on + strand, within PP_1623at 1819.207 kb on - strand, within PP_1623at 1819.406 kb on + strand, within PP_1623at 1819.407 kb on - strand, within PP_1623at 1819.407 kb on - strand, within PP_1623at 1819.407 kb on - strand, within PP_1623at 1819.597 kb on + strand, within PP_1623at 1819.597 kb on + strand, within PP_1623at 1819.598 kb on - strandat 1819.598 kb on - strand, within PP_1623at 1819.631 kb on + strand, within PP_1623at 1819.761 kb on + strandat 1819.761 kb on + strandat 1819.761 kb on + strandat 1819.761 kb on + strandat 1819.761 kb on + strandat 1819.766 kb on - strandat 1819.838 kb on - strandat 1820.442 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
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1,818,256 + -1.6
1,818,307 + PP_1622 0.57 +0.2
1,818,308 - PP_1622 0.57 -0.4
1,818,654 + +1.3
1,818,654 + -0.8
1,818,655 - +0.1
1,818,676 + +0.4
1,818,676 + +0.9
1,818,676 + +0.5
1,818,677 - +0.9
1,818,751 + +0.5
1,818,751 + +0.2
1,818,751 + +1.8
1,818,751 + -0.9
1,818,752 - +0.8
1,818,752 - -0.5
1,818,862 + PP_1623 0.11 +1.1
1,818,863 - PP_1623 0.11 +0.5
1,818,863 - PP_1623 0.11 +0.4
1,818,915 + PP_1623 0.16 +1.3
1,818,915 + PP_1623 0.16 +0.9
1,818,915 + PP_1623 0.16 -0.4
1,818,916 - PP_1623 0.16 +0.1
1,818,954 + PP_1623 0.20 +1.1
1,818,954 + PP_1623 0.20 +0.4
1,818,954 + PP_1623 0.20 +1.2
1,818,955 - PP_1623 0.20 +1.2
1,818,955 - PP_1623 0.20 +0.5
1,818,955 - -0.8
1,819,098 + PP_1623 0.34 +2.0
1,819,206 + PP_1623 0.45 -2.5
1,819,207 - PP_1623 0.45 +1.7
1,819,406 + PP_1623 0.64 +0.6
1,819,407 - PP_1623 0.65 +1.2
1,819,407 - PP_1623 0.65 +1.3
1,819,407 - PP_1623 0.65 +0.1
1,819,597 + PP_1623 0.83 +0.6
1,819,597 + PP_1623 0.83 +0.8
1,819,598 - +0.6
1,819,598 - PP_1623 0.84 +0.8
1,819,631 + PP_1623 0.87 +0.4
1,819,761 + -0.2
1,819,761 + -0.0
1,819,761 + +0.6
1,819,761 + -0.2
1,819,761 + +0.1
1,819,766 - -0.4
1,819,838 - +0.2
1,820,442 + -0.8

Or see this region's nucleotide sequence