Strain Fitness in Pseudomonas putida KT2440 around PP_1578

Experiment: Growth at 34C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1577 and PP_1578 overlap by 4 nucleotidesPP_1578 and PP_5475 overlap by 4 nucleotidesPP_5475 and PP_1579 overlap by 4 nucleotides PP_1577: PP_1577 - Phage tail tape meausure protein, lambda family, at 1,765,962 to 1,768,403 _1577 PP_1578: PP_1578 - conserved protein of unknown function, at 1,768,400 to 1,768,879 _1578 PP_5475: PP_5475 - conserved protein of unknown function, at 1,768,876 to 1,769,256 _5475 PP_1579: PP_1579 - conserved protein of unknown function, at 1,769,253 to 1,772,252 _1579 Position (kb) 1768 1769Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1767.458 kb on + strand, within PP_1577at 1767.458 kb on + strand, within PP_1577at 1767.498 kb on + strand, within PP_1577at 1767.498 kb on + strand, within PP_1577at 1767.499 kb on - strand, within PP_1577at 1767.499 kb on - strand, within PP_1577at 1767.499 kb on - strand, within PP_1577at 1767.555 kb on + strand, within PP_1577at 1767.555 kb on + strand, within PP_1577at 1767.577 kb on + strand, within PP_1577at 1767.577 kb on + strandat 1767.578 kb on - strand, within PP_1577at 1767.618 kb on + strand, within PP_1577at 1767.618 kb on + strand, within PP_1577at 1767.619 kb on - strand, within PP_1577at 1767.619 kb on - strand, within PP_1577at 1767.619 kb on - strand, within PP_1577at 1767.619 kb on - strand, within PP_1577at 1767.681 kb on + strand, within PP_1577at 1767.681 kb on + strand, within PP_1577at 1767.681 kb on + strand, within PP_1577at 1767.682 kb on - strand, within PP_1577at 1767.682 kb on - strand, within PP_1577at 1767.771 kb on + strand, within PP_1577at 1767.772 kb on - strand, within PP_1577at 1767.912 kb on + strand, within PP_1577at 1767.913 kb on - strand, within PP_1577at 1768.107 kb on - strand, within PP_1577at 1768.231 kb on + strandat 1768.231 kb on + strandat 1768.232 kb on - strandat 1768.232 kb on - strandat 1768.241 kb on + strandat 1768.242 kb on - strandat 1768.246 kb on - strandat 1768.344 kb on - strandat 1768.385 kb on + strandat 1768.421 kb on + strandat 1768.421 kb on + strandat 1768.422 kb on - strandat 1768.422 kb on - strandat 1768.422 kb on - strandat 1768.484 kb on + strand, within PP_1578at 1768.484 kb on + strand, within PP_1578at 1768.485 kb on - strand, within PP_1578at 1768.485 kb on - strand, within PP_1578at 1768.485 kb on - strand, within PP_1578at 1768.620 kb on + strand, within PP_1578at 1768.703 kb on + strand, within PP_1578at 1768.704 kb on - strand, within PP_1578at 1768.704 kb on - strand, within PP_1578at 1768.704 kb on - strand, within PP_1578at 1768.704 kb on - strand, within PP_1578at 1768.802 kb on + strand, within PP_1578at 1768.837 kb on + strandat 1768.837 kb on + strandat 1768.837 kb on + strandat 1768.838 kb on - strandat 1768.838 kb on - strandat 1768.838 kb on - strandat 1768.841 kb on + strandat 1768.842 kb on - strandat 1768.842 kb on - strandat 1768.842 kb on - strandat 1768.842 kb on - strandat 1768.872 kb on - strandat 1768.875 kb on + strandat 1768.876 kb on - strandat 1768.876 kb on - strandat 1768.887 kb on + strandat 1768.891 kb on + strandat 1768.891 kb on + strandat 1768.892 kb on - strandat 1768.892 kb on - strandat 1768.892 kb on - strandat 1768.892 kb on - strandat 1768.945 kb on + strand, within PP_5475at 1769.108 kb on - strand, within PP_5475at 1769.245 kb on + strandat 1769.245 kb on + strandat 1769.248 kb on + strandat 1769.458 kb on + strandat 1769.664 kb on + strand, within PP_1579at 1769.665 kb on - strand, within PP_1579at 1769.671 kb on + strand, within PP_1579at 1769.671 kb on + strand, within PP_1579at 1769.671 kb on + strand, within PP_1579at 1769.671 kb on + strand, within PP_1579at 1769.671 kb on + strand, within PP_1579at 1769.671 kb on + strand, within PP_1579at 1769.671 kb on + strand, within PP_1579at 1769.672 kb on - strand, within PP_1579at 1769.672 kb on - strand, within PP_1579at 1769.672 kb on - strand, within PP_1579at 1769.672 kb on - strand, within PP_1579at 1769.672 kb on - strand, within PP_1579at 1769.672 kb on - strand, within PP_1579at 1769.682 kb on + strand, within PP_1579at 1769.683 kb on - strand, within PP_1579at 1769.841 kb on + strand, within PP_1579

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
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1,767,458 + PP_1577 0.61 -0.2
1,767,458 + PP_1577 0.61 -2.8
1,767,498 + PP_1577 0.63 +0.0
1,767,498 + PP_1577 0.63 +0.0
1,767,499 - PP_1577 0.63 +0.4
1,767,499 - PP_1577 0.63 +0.7
1,767,499 - PP_1577 0.63 -0.2
1,767,555 + PP_1577 0.65 +1.2
1,767,555 + PP_1577 0.65 +0.1
1,767,577 + PP_1577 0.66 +0.7
1,767,577 + +2.2
1,767,578 - PP_1577 0.66 +1.0
1,767,618 + PP_1577 0.68 +0.2
1,767,618 + PP_1577 0.68 -0.5
1,767,619 - PP_1577 0.68 +0.3
1,767,619 - PP_1577 0.68 +0.1
1,767,619 - PP_1577 0.68 -0.4
1,767,619 - PP_1577 0.68 +0.3
1,767,681 + PP_1577 0.70 -0.3
1,767,681 + PP_1577 0.70 +0.5
1,767,681 + PP_1577 0.70 -0.3
1,767,682 - PP_1577 0.70 +0.8
1,767,682 - PP_1577 0.70 +0.5
1,767,771 + PP_1577 0.74 -0.5
1,767,772 - PP_1577 0.74 +0.4
1,767,912 + PP_1577 0.80 +0.2
1,767,913 - PP_1577 0.80 -2.3
1,768,107 - PP_1577 0.88 -0.5
1,768,231 + +0.2
1,768,231 + +0.3
1,768,232 - +0.8
1,768,232 - +0.7
1,768,241 + +0.5
1,768,242 - -0.6
1,768,246 - -0.5
1,768,344 - +0.9
1,768,385 + +0.7
1,768,421 + +0.5
1,768,421 + +0.6
1,768,422 - -0.3
1,768,422 - -2.1
1,768,422 - +1.7
1,768,484 + PP_1578 0.17 +0.3
1,768,484 + PP_1578 0.17 +0.7
1,768,485 - PP_1578 0.18 +0.9
1,768,485 - PP_1578 0.18 +0.0
1,768,485 - PP_1578 0.18 +0.6
1,768,620 + PP_1578 0.46 +0.6
1,768,703 + PP_1578 0.63 +0.6
1,768,704 - PP_1578 0.63 +0.1
1,768,704 - PP_1578 0.63 +0.9
1,768,704 - PP_1578 0.63 +1.1
1,768,704 - PP_1578 0.63 +0.6
1,768,802 + PP_1578 0.84 -0.9
1,768,837 + +0.1
1,768,837 + -0.8
1,768,837 + -1.2
1,768,838 - +0.0
1,768,838 - +0.3
1,768,838 - +0.8
1,768,841 + -1.5
1,768,842 - +1.1
1,768,842 - +0.5
1,768,842 - -0.3
1,768,842 - -0.1
1,768,872 - +0.9
1,768,875 + -0.5
1,768,876 - -0.8
1,768,876 - +0.9
1,768,887 + -0.7
1,768,891 + +0.8
1,768,891 + +0.9
1,768,892 - +0.6
1,768,892 - -1.2
1,768,892 - +0.5
1,768,892 - +0.9
1,768,945 + PP_5475 0.18 -0.5
1,769,108 - PP_5475 0.61 +0.5
1,769,245 + +0.5
1,769,245 + -0.9
1,769,248 + +1.0
1,769,458 + +1.4
1,769,664 + PP_1579 0.14 -0.4
1,769,665 - PP_1579 0.14 -1.5
1,769,671 + PP_1579 0.14 +1.0
1,769,671 + PP_1579 0.14 +0.2
1,769,671 + PP_1579 0.14 -0.2
1,769,671 + PP_1579 0.14 +1.5
1,769,671 + PP_1579 0.14 -0.1
1,769,671 + PP_1579 0.14 +0.6
1,769,671 + PP_1579 0.14 +2.1
1,769,672 - PP_1579 0.14 -0.4
1,769,672 - PP_1579 0.14 -1.1
1,769,672 - PP_1579 0.14 +1.0
1,769,672 - PP_1579 0.14 -2.1
1,769,672 - PP_1579 0.14 +0.8
1,769,672 - PP_1579 0.14 -0.1
1,769,682 + PP_1579 0.14 -1.3
1,769,683 - PP_1579 0.14 +0.9
1,769,841 + PP_1579 0.20 +0.0

Or see this region's nucleotide sequence