Strain Fitness in Pseudomonas putida KT2440 around PP_1498

Experiment: Growth at 34C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_1496 and PP_1497 are separated by 166 nucleotidesPP_1497 and PP_1498 are separated by 30 nucleotidesPP_1498 and PP_1499 are separated by 22 nucleotides PP_1496: PP_1496 - Lysine--tRNA ligase, at 1,701,649 to 1,703,151 _1496 PP_1497: PP_1497 - Transcriptional regulator, TetR family, at 1,703,318 to 1,704,034 _1497 PP_1498: PP_1498 - putative Lipoprotein, at 1,704,065 to 1,704,613 _1498 PP_1499: PP_1499 - conserved protein of unknown function, at 1,704,636 to 1,705,964 _1499 Position (kb) 1704 1705Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1703.202 kb on + strandat 1703.202 kb on + strandat 1703.202 kb on + strandat 1703.202 kb on + strandat 1703.203 kb on - strandat 1703.203 kb on - strandat 1703.243 kb on + strandat 1703.243 kb on + strandat 1703.243 kb on + strandat 1703.244 kb on - strandat 1703.256 kb on + strandat 1703.256 kb on + strandat 1703.257 kb on - strandat 1703.311 kb on - strandat 1703.311 kb on - strandat 1703.537 kb on + strand, within PP_1497at 1703.537 kb on + strand, within PP_1497at 1703.537 kb on + strand, within PP_1497at 1703.537 kb on + strand, within PP_1497at 1703.538 kb on - strand, within PP_1497at 1703.538 kb on - strand, within PP_1497at 1703.538 kb on - strand, within PP_1497at 1703.538 kb on - strand, within PP_1497at 1703.540 kb on + strand, within PP_1497at 1703.541 kb on - strand, within PP_1497at 1703.541 kb on - strand, within PP_1497at 1703.541 kb on - strand, within PP_1497at 1703.606 kb on + strand, within PP_1497at 1703.606 kb on + strand, within PP_1497at 1703.606 kb on + strand, within PP_1497at 1703.607 kb on - strand, within PP_1497at 1703.607 kb on - strand, within PP_1497at 1703.607 kb on - strand, within PP_1497at 1703.726 kb on + strand, within PP_1497at 1703.726 kb on + strand, within PP_1497at 1703.940 kb on - strand, within PP_1497at 1703.940 kb on - strand, within PP_1497at 1703.993 kb on - strandat 1704.099 kb on - strandat 1704.251 kb on + strand, within PP_1498at 1704.251 kb on + strand, within PP_1498at 1704.251 kb on + strand, within PP_1498at 1704.293 kb on + strand, within PP_1498at 1704.293 kb on + strand, within PP_1498at 1704.294 kb on - strand, within PP_1498at 1704.294 kb on - strand, within PP_1498at 1704.294 kb on - strand, within PP_1498at 1704.294 kb on - strand, within PP_1498at 1704.416 kb on + strand, within PP_1498at 1704.417 kb on - strand, within PP_1498at 1704.438 kb on + strand, within PP_1498at 1704.438 kb on + strand, within PP_1498at 1704.475 kb on + strand, within PP_1498at 1704.476 kb on - strand, within PP_1498at 1704.476 kb on - strand, within PP_1498at 1704.671 kb on + strandat 1704.671 kb on + strandat 1704.672 kb on - strandat 1704.672 kb on - strandat 1704.672 kb on - strandat 1704.672 kb on - strandat 1704.843 kb on + strand, within PP_1499at 1704.843 kb on + strand, within PP_1499at 1704.843 kb on + strand, within PP_1499at 1704.844 kb on - strand, within PP_1499at 1704.844 kb on - strand, within PP_1499at 1704.846 kb on + strand, within PP_1499at 1704.847 kb on - strand, within PP_1499at 1704.979 kb on - strand, within PP_1499at 1705.120 kb on - strand, within PP_1499at 1705.239 kb on - strand, within PP_1499at 1705.296 kb on + strand, within PP_1499at 1705.296 kb on + strand, within PP_1499at 1705.296 kb on + strand, within PP_1499at 1705.297 kb on - strand, within PP_1499at 1705.297 kb on - strand, within PP_1499at 1705.412 kb on + strand, within PP_1499at 1705.497 kb on + strand, within PP_1499

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
remove
1,703,202 + -0.2
1,703,202 + -2.8
1,703,202 + +0.7
1,703,202 + +0.8
1,703,203 - +0.7
1,703,203 - +0.5
1,703,243 + -0.3
1,703,243 + -0.6
1,703,243 + -1.0
1,703,244 - +1.5
1,703,256 + -0.4
1,703,256 + -1.0
1,703,257 - +0.3
1,703,311 - +0.0
1,703,311 - -0.6
1,703,537 + PP_1497 0.31 -0.4
1,703,537 + PP_1497 0.31 -1.9
1,703,537 + PP_1497 0.31 +0.5
1,703,537 + PP_1497 0.31 +1.1
1,703,538 - PP_1497 0.31 +0.2
1,703,538 - PP_1497 0.31 -1.1
1,703,538 - PP_1497 0.31 +0.6
1,703,538 - PP_1497 0.31 -0.4
1,703,540 + PP_1497 0.31 +0.2
1,703,541 - PP_1497 0.31 +0.2
1,703,541 - PP_1497 0.31 -0.4
1,703,541 - PP_1497 0.31 +0.8
1,703,606 + PP_1497 0.40 -1.2
1,703,606 + PP_1497 0.40 +0.3
1,703,606 + PP_1497 0.40 -0.1
1,703,607 - PP_1497 0.40 +0.3
1,703,607 - PP_1497 0.40 -1.1
1,703,607 - PP_1497 0.40 +0.2
1,703,726 + PP_1497 0.57 -0.1
1,703,726 + PP_1497 0.57 +0.5
1,703,940 - PP_1497 0.87 +1.0
1,703,940 - PP_1497 0.87 +0.6
1,703,993 - +0.9
1,704,099 - +0.3
1,704,251 + PP_1498 0.34 -0.6
1,704,251 + PP_1498 0.34 +0.2
1,704,251 + PP_1498 0.34 -0.1
1,704,293 + PP_1498 0.42 +2.2
1,704,293 + PP_1498 0.42 +1.2
1,704,294 - PP_1498 0.42 -0.1
1,704,294 - PP_1498 0.42 +0.8
1,704,294 - PP_1498 0.42 +0.6
1,704,294 - PP_1498 0.42 +0.4
1,704,416 + PP_1498 0.64 +1.3
1,704,417 - PP_1498 0.64 +0.3
1,704,438 + PP_1498 0.68 -0.6
1,704,438 + PP_1498 0.68 -0.2
1,704,475 + PP_1498 0.75 +0.6
1,704,476 - PP_1498 0.75 +1.2
1,704,476 - PP_1498 0.75 +0.9
1,704,671 + +1.0
1,704,671 + -1.3
1,704,672 - +0.4
1,704,672 - +1.4
1,704,672 - -2.7
1,704,672 - -0.7
1,704,843 + PP_1499 0.16 +0.9
1,704,843 + PP_1499 0.16 +0.7
1,704,843 + PP_1499 0.16 -1.3
1,704,844 - PP_1499 0.16 -0.0
1,704,844 - PP_1499 0.16 +0.9
1,704,846 + PP_1499 0.16 -0.2
1,704,847 - PP_1499 0.16 -1.3
1,704,979 - PP_1499 0.26 -1.8
1,705,120 - PP_1499 0.36 -0.5
1,705,239 - PP_1499 0.45 -0.9
1,705,296 + PP_1499 0.50 -1.0
1,705,296 + PP_1499 0.50 +0.4
1,705,296 + PP_1499 0.50 -0.6
1,705,297 - PP_1499 0.50 +0.9
1,705,297 - PP_1499 0.50 +0.2
1,705,412 + PP_1499 0.58 -0.5
1,705,497 + PP_1499 0.65 +0.3

Or see this region's nucleotide sequence