Strain Fitness in Pseudomonas putida KT2440 around PP_1410

Experiment: Growth at 34C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1409 and PP_1410 are separated by 8 nucleotidesPP_1410 and PP_1411 overlap by 29 nucleotides PP_1409: PP_1409 - ribosomal small subunit pseudouridine synthase A, at 1,607,877 to 1,608,569 _1409 PP_1410: PP_1410 - conserved protein of unknown function, at 1,608,578 to 1,608,811 _1410 PP_1411: PP_1411 - GGDEF domain protein, at 1,608,783 to 1,610,264 _1411 Position (kb) 1608 1609Strain fitness (log2 ratio) -3 -2 -1 0 1at 1607.590 kb on - strandat 1607.590 kb on - strandat 1607.598 kb on + strandat 1607.661 kb on - strandat 1607.700 kb on + strandat 1607.700 kb on + strandat 1607.701 kb on - strandat 1607.701 kb on - strandat 1607.751 kb on + strandat 1607.751 kb on + strandat 1607.821 kb on + strandat 1607.821 kb on + strandat 1607.822 kb on - strandat 1607.850 kb on - strandat 1607.850 kb on - strandat 1607.850 kb on - strandat 1607.878 kb on + strandat 1607.889 kb on + strandat 1607.889 kb on + strandat 1608.022 kb on + strand, within PP_1409at 1608.023 kb on + strand, within PP_1409at 1608.113 kb on - strand, within PP_1409at 1608.139 kb on + strand, within PP_1409at 1608.139 kb on + strand, within PP_1409at 1608.139 kb on + strand, within PP_1409at 1608.140 kb on - strand, within PP_1409at 1608.140 kb on - strand, within PP_1409at 1608.140 kb on - strand, within PP_1409at 1608.140 kb on - strand, within PP_1409at 1608.176 kb on - strand, within PP_1409at 1608.279 kb on + strand, within PP_1409at 1608.280 kb on - strand, within PP_1409at 1608.373 kb on + strand, within PP_1409at 1608.374 kb on - strand, within PP_1409at 1608.374 kb on - strand, within PP_1409at 1608.374 kb on - strand, within PP_1409at 1608.374 kb on - strand, within PP_1409at 1608.429 kb on + strand, within PP_1409at 1608.430 kb on - strand, within PP_1409at 1608.471 kb on + strand, within PP_1409at 1608.532 kb on + strandat 1608.532 kb on + strandat 1608.533 kb on - strandat 1608.533 kb on - strandat 1608.533 kb on - strandat 1608.533 kb on - strandat 1608.699 kb on + strand, within PP_1410at 1608.878 kb on + strandat 1608.940 kb on + strand, within PP_1411at 1609.056 kb on + strand, within PP_1411at 1609.056 kb on + strand, within PP_1411at 1609.056 kb on + strand, within PP_1411at 1609.056 kb on + strand, within PP_1411at 1609.057 kb on - strand, within PP_1411at 1609.057 kb on - strand, within PP_1411at 1609.057 kb on - strand, within PP_1411at 1609.057 kb on - strand, within PP_1411at 1609.057 kb on - strand, within PP_1411at 1609.057 kb on - strand, within PP_1411at 1609.057 kb on - strand, within PP_1411at 1609.058 kb on + strand, within PP_1411at 1609.058 kb on + strand, within PP_1411at 1609.059 kb on - strand, within PP_1411at 1609.059 kb on - strand, within PP_1411at 1609.059 kb on - strand, within PP_1411at 1609.104 kb on + strand, within PP_1411at 1609.252 kb on + strand, within PP_1411at 1609.355 kb on + strand, within PP_1411at 1609.356 kb on - strand, within PP_1411at 1609.356 kb on - strand, within PP_1411at 1609.375 kb on + strand, within PP_1411at 1609.376 kb on - strand, within PP_1411at 1609.432 kb on + strand, within PP_1411at 1609.433 kb on - strand, within PP_1411at 1609.562 kb on + strand, within PP_1411at 1609.562 kb on + strand, within PP_1411at 1609.563 kb on - strand, within PP_1411at 1609.563 kb on - strand, within PP_1411at 1609.563 kb on - strand, within PP_1411at 1609.566 kb on + strand, within PP_1411at 1609.566 kb on + strand, within PP_1411at 1609.566 kb on + strand, within PP_1411at 1609.567 kb on - strand, within PP_1411at 1609.567 kb on - strand, within PP_1411at 1609.567 kb on - strand, within PP_1411at 1609.669 kb on + strand, within PP_1411at 1609.698 kb on + strand, within PP_1411at 1609.698 kb on + strand, within PP_1411at 1609.698 kb on + strand, within PP_1411at 1609.699 kb on - strand, within PP_1411at 1609.699 kb on - strand, within PP_1411at 1609.699 kb on - strand, within PP_1411at 1609.742 kb on - strand, within PP_1411at 1609.756 kb on + strand, within PP_1411at 1609.756 kb on + strand, within PP_1411at 1609.757 kb on - strand, within PP_1411at 1609.757 kb on - strand, within PP_1411at 1609.757 kb on - strand, within PP_1411

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
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1,607,590 - -0.9
1,607,590 - -0.4
1,607,598 + +0.4
1,607,661 - -0.3
1,607,700 + +0.9
1,607,700 + -0.2
1,607,701 - +0.3
1,607,701 - +1.4
1,607,751 + +0.2
1,607,751 + -1.3
1,607,821 + +1.0
1,607,821 + +0.3
1,607,822 - +0.4
1,607,850 - +1.2
1,607,850 - +1.3
1,607,850 - +0.5
1,607,878 + -0.0
1,607,889 + -0.5
1,607,889 + +0.9
1,608,022 + PP_1409 0.21 -0.4
1,608,023 + PP_1409 0.21 +0.8
1,608,113 - PP_1409 0.34 +1.0
1,608,139 + PP_1409 0.38 +1.2
1,608,139 + PP_1409 0.38 +1.0
1,608,139 + PP_1409 0.38 +0.6
1,608,140 - PP_1409 0.38 -1.0
1,608,140 - PP_1409 0.38 +1.0
1,608,140 - PP_1409 0.38 -1.6
1,608,140 - PP_1409 0.38 +1.0
1,608,176 - PP_1409 0.43 +0.7
1,608,279 + PP_1409 0.58 +0.5
1,608,280 - PP_1409 0.58 -1.8
1,608,373 + PP_1409 0.72 -0.2
1,608,374 - PP_1409 0.72 +0.5
1,608,374 - PP_1409 0.72 +1.5
1,608,374 - PP_1409 0.72 -0.2
1,608,374 - PP_1409 0.72 +0.0
1,608,429 + PP_1409 0.80 -0.7
1,608,430 - PP_1409 0.80 +0.0
1,608,471 + PP_1409 0.86 +0.1
1,608,532 + -0.2
1,608,532 + +1.4
1,608,533 - +1.0
1,608,533 - -0.0
1,608,533 - -0.3
1,608,533 - +0.6
1,608,699 + PP_1410 0.52 +1.3
1,608,878 + +0.4
1,608,940 + PP_1411 0.11 +0.4
1,609,056 + PP_1411 0.18 +0.3
1,609,056 + PP_1411 0.18 +1.7
1,609,056 + PP_1411 0.18 +0.6
1,609,056 + PP_1411 0.18 +0.2
1,609,057 - PP_1411 0.18 +0.2
1,609,057 - PP_1411 0.18 -0.2
1,609,057 - PP_1411 0.18 +0.2
1,609,057 - PP_1411 0.18 +0.6
1,609,057 - PP_1411 0.18 -0.8
1,609,057 - PP_1411 0.18 -0.5
1,609,057 - PP_1411 0.18 -1.0
1,609,058 + PP_1411 0.19 -3.6
1,609,058 + PP_1411 0.19 -0.6
1,609,059 - PP_1411 0.19 -0.5
1,609,059 - PP_1411 0.19 -0.1
1,609,059 - PP_1411 0.19 +1.1
1,609,104 + PP_1411 0.22 +0.8
1,609,252 + PP_1411 0.32 +0.5
1,609,355 + PP_1411 0.39 +0.5
1,609,356 - PP_1411 0.39 +0.1
1,609,356 - PP_1411 0.39 -1.1
1,609,375 + PP_1411 0.40 +0.3
1,609,376 - PP_1411 0.40 +0.1
1,609,432 + PP_1411 0.44 -1.2
1,609,433 - PP_1411 0.44 -0.0
1,609,562 + PP_1411 0.53 +0.8
1,609,562 + PP_1411 0.53 -0.2
1,609,563 - PP_1411 0.53 -0.8
1,609,563 - PP_1411 0.53 +0.4
1,609,563 - PP_1411 0.53 -2.9
1,609,566 + PP_1411 0.53 +0.1
1,609,566 + PP_1411 0.53 +1.0
1,609,566 + PP_1411 0.53 -2.3
1,609,567 - PP_1411 0.53 -0.2
1,609,567 - PP_1411 0.53 +0.9
1,609,567 - PP_1411 0.53 +0.8
1,609,669 + PP_1411 0.60 +0.5
1,609,698 + PP_1411 0.62 +0.8
1,609,698 + PP_1411 0.62 -0.1
1,609,698 + PP_1411 0.62 +0.4
1,609,699 - PP_1411 0.62 +0.0
1,609,699 - PP_1411 0.62 +0.3
1,609,699 - PP_1411 0.62 -0.5
1,609,742 - PP_1411 0.65 +0.4
1,609,756 + PP_1411 0.66 -0.1
1,609,756 + PP_1411 0.66 -0.6
1,609,757 - PP_1411 0.66 -0.7
1,609,757 - PP_1411 0.66 +0.0
1,609,757 - PP_1411 0.66 -0.9

Or see this region's nucleotide sequence