Strain Fitness in Pseudomonas simiae WCS417 around PS417_06660

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06655 and PS417_06660 overlap by 4 nucleotidesPS417_06660 and PS417_06665 are separated by 90 nucleotides PS417_06655: PS417_06655 - class V aminotransferase, at 1,476,129 to 1,477,310 _06655 PS417_06660: PS417_06660 - endoribonuclease, at 1,477,307 to 1,477,777 _06660 PS417_06665: PS417_06665 - LysR family transcriptional regulator, at 1,477,868 to 1,478,734 _06665 Position (kb) 1477 1478Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1476.380 kb on + strand, within PS417_06655at 1476.582 kb on + strand, within PS417_06655at 1476.631 kb on + strand, within PS417_06655at 1476.754 kb on + strand, within PS417_06655at 1476.755 kb on - strand, within PS417_06655at 1476.939 kb on + strand, within PS417_06655at 1476.939 kb on + strand, within PS417_06655at 1476.939 kb on + strand, within PS417_06655at 1476.940 kb on - strand, within PS417_06655at 1476.995 kb on + strand, within PS417_06655at 1476.995 kb on + strand, within PS417_06655at 1477.626 kb on + strand, within PS417_06660at 1477.626 kb on + strand, within PS417_06660at 1477.643 kb on + strand, within PS417_06660at 1477.643 kb on + strand, within PS417_06660at 1477.644 kb on - strand, within PS417_06660at 1477.644 kb on - strand, within PS417_06660at 1477.701 kb on + strand, within PS417_06660at 1477.701 kb on + strand, within PS417_06660at 1477.701 kb on + strand, within PS417_06660at 1477.701 kb on + strand, within PS417_06660at 1477.701 kb on + strand, within PS417_06660at 1477.702 kb on - strand, within PS417_06660at 1477.856 kb on + strandat 1478.050 kb on + strand, within PS417_06665at 1478.088 kb on + strand, within PS417_06665at 1478.089 kb on - strand, within PS417_06665at 1478.089 kb on - strand, within PS417_06665at 1478.133 kb on + strand, within PS417_06665at 1478.183 kb on + strand, within PS417_06665at 1478.184 kb on - strand, within PS417_06665at 1478.186 kb on + strand, within PS417_06665at 1478.186 kb on + strand, within PS417_06665at 1478.215 kb on + strand, within PS417_06665at 1478.215 kb on + strand, within PS417_06665at 1478.215 kb on + strand, within PS417_06665at 1478.338 kb on + strand, within PS417_06665at 1478.338 kb on + strand, within PS417_06665at 1478.339 kb on - strand, within PS417_06665at 1478.379 kb on - strand, within PS417_06665at 1478.520 kb on + strand, within PS417_06665at 1478.520 kb on + strand, within PS417_06665at 1478.520 kb on + strand, within PS417_06665at 1478.520 kb on + strand, within PS417_06665at 1478.521 kb on - strand, within PS417_06665at 1478.521 kb on - strand, within PS417_06665at 1478.521 kb on - strand, within PS417_06665at 1478.524 kb on - strand, within PS417_06665at 1478.524 kb on - strand, within PS417_06665

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,476,380 + PS417_06655 0.21 -0.1
1,476,582 + PS417_06655 0.38 -0.5
1,476,631 + PS417_06655 0.42 +0.1
1,476,754 + PS417_06655 0.53 +0.0
1,476,755 - PS417_06655 0.53 +0.3
1,476,939 + PS417_06655 0.69 -0.7
1,476,939 + PS417_06655 0.69 +3.2
1,476,939 + PS417_06655 0.69 -2.0
1,476,940 - PS417_06655 0.69 -0.1
1,476,995 + PS417_06655 0.73 +1.3
1,476,995 + PS417_06655 0.73 -1.4
1,477,626 + PS417_06660 0.68 +1.2
1,477,626 + PS417_06660 0.68 -0.1
1,477,643 + PS417_06660 0.71 -1.0
1,477,643 + PS417_06660 0.71 -0.8
1,477,644 - PS417_06660 0.72 -1.1
1,477,644 - PS417_06660 0.72 -0.8
1,477,701 + PS417_06660 0.84 -0.1
1,477,701 + PS417_06660 0.84 -2.0
1,477,701 + PS417_06660 0.84 -0.6
1,477,701 + PS417_06660 0.84 -0.1
1,477,701 + PS417_06660 0.84 -0.8
1,477,702 - PS417_06660 0.84 +0.1
1,477,856 + +0.2
1,478,050 + PS417_06665 0.21 -0.2
1,478,088 + PS417_06665 0.25 -0.0
1,478,089 - PS417_06665 0.25 -0.6
1,478,089 - PS417_06665 0.25 -0.0
1,478,133 + PS417_06665 0.31 +0.2
1,478,183 + PS417_06665 0.36 +0.5
1,478,184 - PS417_06665 0.36 +0.9
1,478,186 + PS417_06665 0.37 -0.1
1,478,186 + PS417_06665 0.37 -2.0
1,478,215 + PS417_06665 0.40 +0.7
1,478,215 + PS417_06665 0.40 +0.1
1,478,215 + PS417_06665 0.40 +0.9
1,478,338 + PS417_06665 0.54 -0.2
1,478,338 + PS417_06665 0.54 -0.2
1,478,339 - PS417_06665 0.54 +1.2
1,478,379 - PS417_06665 0.59 -1.3
1,478,520 + PS417_06665 0.75 -0.7
1,478,520 + PS417_06665 0.75 +0.3
1,478,520 + PS417_06665 0.75 -1.2
1,478,520 + PS417_06665 0.75 -2.3
1,478,521 - PS417_06665 0.75 -0.5
1,478,521 - PS417_06665 0.75 -0.4
1,478,521 - PS417_06665 0.75 +0.2
1,478,524 - PS417_06665 0.76 -0.2
1,478,524 - PS417_06665 0.76 +0.0

Or see this region's nucleotide sequence