Strain Fitness in Pseudomonas putida KT2440 around PP_3955

Experiment: Growth at 25C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3954 and PP_3955 are separated by 27 nucleotidesPP_3955 and PP_3956 overlap by 4 nucleotidesPP_3956 and PP_3957 are separated by 27 nucleotides PP_3954: PP_3954 - periplasmic binding subunit of unknown solute, at 4,460,535 to 4,461,485 _3954 PP_3955: PP_3955 - permease, at 4,461,513 to 4,463,540 _3955 PP_3956: PP_3956 - conserved protein of unknown function, at 4,463,537 to 4,463,953 _3956 PP_3957: PP_3957 - choline/carnitine/betaine transporter BetTC, at 4,463,981 to 4,465,954 _3957 Position (kb) 4461 4462 4463 4464Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4460.634 kb on - strand, within PP_3954at 4460.646 kb on + strand, within PP_3954at 4460.646 kb on + strand, within PP_3954at 4460.646 kb on + strand, within PP_3954at 4460.647 kb on - strand, within PP_3954at 4460.647 kb on - strand, within PP_3954at 4460.647 kb on - strand, within PP_3954at 4460.650 kb on - strand, within PP_3954at 4460.662 kb on + strand, within PP_3954at 4460.662 kb on + strand, within PP_3954at 4460.679 kb on + strand, within PP_3954at 4460.679 kb on + strand, within PP_3954at 4460.679 kb on + strand, within PP_3954at 4460.680 kb on - strand, within PP_3954at 4460.680 kb on - strand, within PP_3954at 4460.692 kb on + strand, within PP_3954at 4460.692 kb on + strand, within PP_3954at 4460.693 kb on - strand, within PP_3954at 4460.693 kb on - strand, within PP_3954at 4460.693 kb on - strand, within PP_3954at 4460.870 kb on + strand, within PP_3954at 4460.883 kb on + strand, within PP_3954at 4460.949 kb on - strand, within PP_3954at 4461.018 kb on - strand, within PP_3954at 4461.045 kb on + strand, within PP_3954at 4461.161 kb on - strand, within PP_3954at 4461.174 kb on - strand, within PP_3954at 4461.243 kb on + strand, within PP_3954at 4461.243 kb on + strand, within PP_3954at 4461.243 kb on + strand, within PP_3954at 4461.243 kb on + strand, within PP_3954at 4461.243 kb on + strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.244 kb on - strand, within PP_3954at 4461.265 kb on + strand, within PP_3954at 4461.265 kb on + strand, within PP_3954at 4461.265 kb on + strand, within PP_3954at 4461.266 kb on - strand, within PP_3954at 4461.328 kb on - strand, within PP_3954at 4461.346 kb on + strand, within PP_3954at 4461.396 kb on - strandat 4461.512 kb on + strandat 4461.513 kb on - strandat 4461.513 kb on - strandat 4461.641 kb on - strandat 4461.652 kb on + strandat 4461.652 kb on + strandat 4461.653 kb on - strandat 4461.653 kb on - strandat 4461.681 kb on + strandat 4461.690 kb on + strandat 4461.690 kb on + strandat 4461.690 kb on + strandat 4461.690 kb on + strandat 4461.690 kb on + strandat 4461.690 kb on + strandat 4461.691 kb on - strandat 4461.768 kb on + strand, within PP_3955at 4461.777 kb on + strand, within PP_3955at 4461.777 kb on + strand, within PP_3955at 4461.778 kb on - strand, within PP_3955at 4461.778 kb on - strand, within PP_3955at 4461.889 kb on + strand, within PP_3955at 4461.890 kb on - strand, within PP_3955at 4462.023 kb on + strand, within PP_3955at 4462.024 kb on - strand, within PP_3955at 4462.024 kb on - strand, within PP_3955at 4462.038 kb on + strand, within PP_3955at 4462.038 kb on + strand, within PP_3955at 4462.038 kb on + strand, within PP_3955at 4462.038 kb on + strand, within PP_3955at 4462.038 kb on + strand, within PP_3955at 4462.039 kb on - strand, within PP_3955at 4462.039 kb on - strand, within PP_3955at 4462.039 kb on - strand, within PP_3955at 4462.039 kb on - strand, within PP_3955at 4462.053 kb on + strand, within PP_3955at 4462.053 kb on + strand, within PP_3955at 4462.053 kb on + strand, within PP_3955at 4462.053 kb on + strand, within PP_3955at 4462.059 kb on + strand, within PP_3955at 4462.059 kb on + strand, within PP_3955at 4462.060 kb on - strand, within PP_3955at 4462.196 kb on + strand, within PP_3955at 4462.196 kb on + strand, within PP_3955at 4462.272 kb on + strand, within PP_3955at 4462.429 kb on - strand, within PP_3955at 4462.643 kb on - strand, within PP_3955at 4462.897 kb on + strand, within PP_3955at 4462.942 kb on - strand, within PP_3955at 4462.942 kb on - strand, within PP_3955at 4463.008 kb on + strand, within PP_3955at 4463.008 kb on + strand, within PP_3955at 4463.008 kb on + strand, within PP_3955at 4463.009 kb on - strand, within PP_3955at 4463.040 kb on + strand, within PP_3955at 4463.040 kb on + strand, within PP_3955at 4463.040 kb on + strand, within PP_3955at 4463.040 kb on + strand, within PP_3955at 4463.041 kb on - strand, within PP_3955at 4463.041 kb on - strand, within PP_3955at 4463.041 kb on - strand, within PP_3955at 4463.041 kb on - strand, within PP_3955at 4463.041 kb on - strand, within PP_3955at 4463.122 kb on - strand, within PP_3955at 4463.269 kb on - strand, within PP_3955at 4463.269 kb on - strand, within PP_3955at 4463.269 kb on - strand, within PP_3955at 4463.316 kb on + strand, within PP_3955at 4463.316 kb on + strand, within PP_3955at 4463.316 kb on + strand, within PP_3955at 4463.316 kb on + strand, within PP_3955at 4463.317 kb on - strand, within PP_3955at 4463.317 kb on - strand, within PP_3955at 4463.317 kb on - strand, within PP_3955at 4463.317 kb on - strand, within PP_3955at 4463.317 kb on - strand, within PP_3955at 4463.317 kb on - strand, within PP_3955at 4463.437 kb on + strandat 4463.437 kb on + strandat 4463.502 kb on + strandat 4463.600 kb on - strand, within PP_3956at 4463.649 kb on - strand, within PP_3956at 4463.649 kb on - strand, within PP_3956at 4463.649 kb on - strand, within PP_3956at 4463.673 kb on + strand, within PP_3956at 4463.769 kb on + strand, within PP_3956at 4463.769 kb on + strand, within PP_3956at 4463.770 kb on - strand, within PP_3956at 4463.858 kb on + strand, within PP_3956at 4463.859 kb on - strand, within PP_3956at 4463.866 kb on - strand, within PP_3956at 4463.866 kb on - strand, within PP_3956at 4463.895 kb on + strand, within PP_3956at 4464.000 kb on + strandat 4464.000 kb on + strandat 4464.000 kb on + strandat 4464.000 kb on + strandat 4464.001 kb on - strandat 4464.001 kb on - strandat 4464.001 kb on - strandat 4464.018 kb on + strandat 4464.019 kb on - strandat 4464.019 kb on - strandat 4464.019 kb on - strandat 4464.115 kb on - strandat 4464.166 kb on + strandat 4464.167 kb on - strandat 4464.193 kb on - strand, within PP_3957at 4464.193 kb on - strand, within PP_3957at 4464.233 kb on + strand, within PP_3957at 4464.233 kb on + strand, within PP_3957at 4464.234 kb on - strand, within PP_3957at 4464.332 kb on - strand, within PP_3957at 4464.371 kb on - strand, within PP_3957

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C; with MOPS
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4,460,634 - PP_3954 0.10 +1.9
4,460,646 + PP_3954 0.12 +0.6
4,460,646 + PP_3954 0.12 +0.8
4,460,646 + PP_3954 0.12 +0.9
4,460,647 - PP_3954 0.12 -3.7
4,460,647 - PP_3954 0.12 -0.5
4,460,647 - PP_3954 0.12 +0.4
4,460,650 - PP_3954 0.12 -3.8
4,460,662 + PP_3954 0.13 +0.6
4,460,662 + PP_3954 0.13 -0.3
4,460,679 + PP_3954 0.15 +0.2
4,460,679 + PP_3954 0.15 -0.1
4,460,679 + PP_3954 0.15 -0.7
4,460,680 - PP_3954 0.15 -0.5
4,460,680 - PP_3954 0.15 +1.0
4,460,692 + PP_3954 0.17 -0.5
4,460,692 + PP_3954 0.17 +0.0
4,460,693 - PP_3954 0.17 -2.4
4,460,693 - PP_3954 0.17 +0.3
4,460,693 - PP_3954 0.17 +1.0
4,460,870 + PP_3954 0.35 -1.3
4,460,883 + PP_3954 0.37 +0.7
4,460,949 - PP_3954 0.44 +0.5
4,461,018 - PP_3954 0.51 +0.6
4,461,045 + PP_3954 0.54 +0.2
4,461,161 - PP_3954 0.66 -0.6
4,461,174 - PP_3954 0.67 +0.1
4,461,243 + PP_3954 0.74 -1.0
4,461,243 + PP_3954 0.74 -1.9
4,461,243 + PP_3954 0.74 -1.2
4,461,243 + PP_3954 0.74 +0.6
4,461,243 + PP_3954 0.74 -0.2
4,461,244 - PP_3954 0.75 -2.0
4,461,244 - PP_3954 0.75 -0.7
4,461,244 - PP_3954 0.75 +0.2
4,461,244 - PP_3954 0.75 -1.1
4,461,244 - PP_3954 0.75 -0.2
4,461,244 - PP_3954 0.75 -0.9
4,461,244 - PP_3954 0.75 +0.2
4,461,244 - PP_3954 0.75 -0.3
4,461,265 + PP_3954 0.77 -0.6
4,461,265 + PP_3954 0.77 -0.5
4,461,265 + PP_3954 0.77 +1.3
4,461,266 - PP_3954 0.77 +1.1
4,461,328 - PP_3954 0.83 -0.9
4,461,346 + PP_3954 0.85 -2.3
4,461,396 - -0.0
4,461,512 + +1.0
4,461,513 - +0.8
4,461,513 - -0.8
4,461,641 - -1.7
4,461,652 + +0.3
4,461,652 + +0.3
4,461,653 - +0.3
4,461,653 - -0.6
4,461,681 + -0.5
4,461,690 + -0.7
4,461,690 + +0.6
4,461,690 + +0.4
4,461,690 + +0.6
4,461,690 + +0.8
4,461,690 + -1.5
4,461,691 - +0.5
4,461,768 + PP_3955 0.13 -0.5
4,461,777 + PP_3955 0.13 -0.4
4,461,777 + PP_3955 0.13 +0.1
4,461,778 - PP_3955 0.13 +0.3
4,461,778 - PP_3955 0.13 -0.6
4,461,889 + PP_3955 0.19 -0.4
4,461,890 - PP_3955 0.19 -1.5
4,462,023 + PP_3955 0.25 -0.7
4,462,024 - PP_3955 0.25 -1.1
4,462,024 - PP_3955 0.25 +0.2
4,462,038 + PP_3955 0.26 +0.8
4,462,038 + PP_3955 0.26 +1.1
4,462,038 + PP_3955 0.26 -2.0
4,462,038 + PP_3955 0.26 -0.9
4,462,038 + PP_3955 0.26 -0.5
4,462,039 - PP_3955 0.26 -0.4
4,462,039 - PP_3955 0.26 -1.5
4,462,039 - PP_3955 0.26 -1.1
4,462,039 - PP_3955 0.26 -0.2
4,462,053 + PP_3955 0.27 +0.1
4,462,053 + PP_3955 0.27 -0.5
4,462,053 + PP_3955 0.27 -0.7
4,462,053 + PP_3955 0.27 -4.4
4,462,059 + PP_3955 0.27 -1.7
4,462,059 + PP_3955 0.27 -1.3
4,462,060 - PP_3955 0.27 -0.2
4,462,196 + PP_3955 0.34 -1.0
4,462,196 + PP_3955 0.34 -0.0
4,462,272 + PP_3955 0.37 +0.2
4,462,429 - PP_3955 0.45 +1.5
4,462,643 - PP_3955 0.56 -1.1
4,462,897 + PP_3955 0.68 +0.2
4,462,942 - PP_3955 0.70 +0.9
4,462,942 - PP_3955 0.70 +1.1
4,463,008 + PP_3955 0.74 -1.8
4,463,008 + PP_3955 0.74 +1.0
4,463,008 + PP_3955 0.74 -1.2
4,463,009 - PP_3955 0.74 +0.5
4,463,040 + PP_3955 0.75 +1.1
4,463,040 + PP_3955 0.75 +0.2
4,463,040 + PP_3955 0.75 +0.8
4,463,040 + PP_3955 0.75 -0.6
4,463,041 - PP_3955 0.75 -0.3
4,463,041 - PP_3955 0.75 -0.6
4,463,041 - PP_3955 0.75 +0.0
4,463,041 - PP_3955 0.75 -0.7
4,463,041 - PP_3955 0.75 -1.0
4,463,122 - PP_3955 0.79 -2.0
4,463,269 - PP_3955 0.87 +0.7
4,463,269 - PP_3955 0.87 -0.8
4,463,269 - PP_3955 0.87 +0.9
4,463,316 + PP_3955 0.89 -0.7
4,463,316 + PP_3955 0.89 -0.8
4,463,316 + PP_3955 0.89 -1.3
4,463,316 + PP_3955 0.89 -0.3
4,463,317 - PP_3955 0.89 +0.4
4,463,317 - PP_3955 0.89 +0.5
4,463,317 - PP_3955 0.89 +0.1
4,463,317 - PP_3955 0.89 -0.6
4,463,317 - PP_3955 0.89 +0.7
4,463,317 - PP_3955 0.89 -3.6
4,463,437 + -0.1
4,463,437 + -0.1
4,463,502 + +0.5
4,463,600 - PP_3956 0.15 +0.5
4,463,649 - PP_3956 0.27 +0.8
4,463,649 - PP_3956 0.27 +0.2
4,463,649 - PP_3956 0.27 -0.9
4,463,673 + PP_3956 0.33 -1.3
4,463,769 + PP_3956 0.56 -1.8
4,463,769 + PP_3956 0.56 +0.5
4,463,770 - PP_3956 0.56 +0.1
4,463,858 + PP_3956 0.77 -1.2
4,463,859 - PP_3956 0.77 -0.3
4,463,866 - PP_3956 0.79 -3.6
4,463,866 - PP_3956 0.79 -0.1
4,463,895 + PP_3956 0.86 -0.3
4,464,000 + -2.6
4,464,000 + +0.4
4,464,000 + -0.0
4,464,000 + +0.7
4,464,001 - -0.5
4,464,001 - -1.5
4,464,001 - -2.9
4,464,018 + +1.0
4,464,019 - +0.5
4,464,019 - +1.7
4,464,019 - +0.8
4,464,115 - -2.4
4,464,166 + -0.1
4,464,167 - +0.1
4,464,193 - PP_3957 0.11 +1.0
4,464,193 - PP_3957 0.11 +0.3
4,464,233 + PP_3957 0.13 +0.4
4,464,233 + PP_3957 0.13 +0.4
4,464,234 - PP_3957 0.13 +1.9
4,464,332 - PP_3957 0.18 -1.0
4,464,371 - PP_3957 0.20 +0.8

Or see this region's nucleotide sequence