Strain Fitness in Pseudomonas putida KT2440 around PP_1556

Experiment: Growth at 25C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1555 and PP_1556 overlap by 4 nucleotidesPP_1556 and PP_1557 overlap by 28 nucleotidesPP_1557 and PP_1558 are separated by 10 nucleotidesPP_1558 and PP_1559 are separated by 199 nucleotides PP_1555: PP_1555 - putative Phage integrase, at 1,753,031 to 1,754,302 _1555 PP_1556: PP_1556 - conserved protein of unknown function, at 1,754,299 to 1,754,619 _1556 PP_1557: PP_1557 - conserved protein of unknown function, at 1,754,592 to 1,754,933 _1557 PP_1558: PP_1558 - conserved protein of unknown function, at 1,754,944 to 1,755,285 _1558 PP_1559: PP_1559 - Holin, at 1,755,485 to 1,755,808 _1559 Position (kb) 1754 1755Strain fitness (log2 ratio) -3 -2 -1 0 1at 1753.487 kb on + strand, within PP_1555at 1753.487 kb on + strand, within PP_1555at 1753.565 kb on - strand, within PP_1555at 1753.899 kb on - strand, within PP_1555at 1754.008 kb on - strand, within PP_1555at 1754.056 kb on - strand, within PP_1555at 1754.106 kb on - strand, within PP_1555at 1754.106 kb on - strand, within PP_1555at 1754.295 kb on - strandat 1754.420 kb on - strand, within PP_1556at 1754.420 kb on - strand, within PP_1556at 1754.488 kb on - strand, within PP_1556at 1754.488 kb on - strand, within PP_1556at 1754.669 kb on - strand, within PP_1557at 1754.669 kb on - strand, within PP_1557at 1754.669 kb on - strand, within PP_1557at 1754.753 kb on - strand, within PP_1557at 1754.876 kb on + strand, within PP_1557at 1754.877 kb on - strand, within PP_1557at 1754.877 kb on - strand, within PP_1557at 1754.877 kb on - strand, within PP_1557at 1754.877 kb on - strand, within PP_1557at 1754.877 kb on - strand, within PP_1557at 1754.877 kb on - strand, within PP_1557at 1754.880 kb on + strand, within PP_1557at 1754.880 kb on + strand, within PP_1557at 1754.880 kb on + strand, within PP_1557at 1754.881 kb on - strand, within PP_1557at 1754.881 kb on - strand, within PP_1557at 1754.881 kb on - strand, within PP_1557at 1754.881 kb on - strand, within PP_1557at 1754.881 kb on - strand, within PP_1557at 1754.932 kb on - strandat 1754.955 kb on - strandat 1754.971 kb on + strandat 1754.971 kb on + strandat 1754.971 kb on + strandat 1754.972 kb on - strandat 1755.098 kb on + strand, within PP_1558at 1755.099 kb on - strand, within PP_1558at 1755.118 kb on + strand, within PP_1558at 1755.148 kb on + strand, within PP_1558at 1755.148 kb on + strand, within PP_1558at 1755.148 kb on + strand, within PP_1558at 1755.149 kb on - strand, within PP_1558at 1755.151 kb on + strand, within PP_1558at 1755.152 kb on - strand, within PP_1558at 1755.152 kb on - strand, within PP_1558at 1755.152 kb on - strand, within PP_1558at 1755.152 kb on - strand, within PP_1558at 1755.152 kb on - strand, within PP_1558at 1755.152 kb on - strand, within PP_1558at 1755.152 kb on - strand, within PP_1558at 1755.152 kb on - strand, within PP_1558at 1755.264 kb on + strandat 1755.265 kb on - strandat 1755.265 kb on - strandat 1755.265 kb on - strandat 1755.305 kb on + strandat 1755.317 kb on + strandat 1755.368 kb on + strandat 1755.369 kb on - strandat 1755.563 kb on + strand, within PP_1559at 1755.563 kb on + strand, within PP_1559at 1755.563 kb on + strand, within PP_1559at 1755.564 kb on - strand, within PP_1559at 1755.608 kb on + strand, within PP_1559at 1755.608 kb on + strand, within PP_1559at 1755.609 kb on - strand, within PP_1559at 1755.609 kb on - strand, within PP_1559

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C; with MOPS
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1,753,487 + PP_1555 0.36 +0.3
1,753,487 + PP_1555 0.36 -1.5
1,753,565 - PP_1555 0.42 -0.3
1,753,899 - PP_1555 0.68 +0.3
1,754,008 - PP_1555 0.77 +0.4
1,754,056 - PP_1555 0.81 +0.7
1,754,106 - PP_1555 0.85 -0.1
1,754,106 - PP_1555 0.85 -0.1
1,754,295 - -0.7
1,754,420 - PP_1556 0.38 +1.1
1,754,420 - PP_1556 0.38 +0.3
1,754,488 - PP_1556 0.59 -1.7
1,754,488 - PP_1556 0.59 +0.7
1,754,669 - PP_1557 0.23 +1.4
1,754,669 - PP_1557 0.23 +0.6
1,754,669 - PP_1557 0.23 +1.5
1,754,753 - PP_1557 0.47 -0.5
1,754,876 + PP_1557 0.83 -1.7
1,754,877 - PP_1557 0.83 +0.3
1,754,877 - PP_1557 0.83 +1.3
1,754,877 - PP_1557 0.83 -0.7
1,754,877 - PP_1557 0.83 -0.3
1,754,877 - PP_1557 0.83 +0.6
1,754,877 - PP_1557 0.83 +0.7
1,754,880 + PP_1557 0.84 +0.6
1,754,880 + PP_1557 0.84 -0.1
1,754,880 + PP_1557 0.84 -0.5
1,754,881 - PP_1557 0.85 -1.7
1,754,881 - PP_1557 0.85 -0.2
1,754,881 - PP_1557 0.85 +0.3
1,754,881 - PP_1557 0.85 -0.5
1,754,881 - PP_1557 0.85 +0.4
1,754,932 - -0.4
1,754,955 - +0.0
1,754,971 + -3.5
1,754,971 + -1.4
1,754,971 + -0.3
1,754,972 - +0.2
1,755,098 + PP_1558 0.45 -0.7
1,755,099 - PP_1558 0.45 -0.7
1,755,118 + PP_1558 0.51 -0.0
1,755,148 + PP_1558 0.60 -1.4
1,755,148 + PP_1558 0.60 +0.7
1,755,148 + PP_1558 0.60 +0.4
1,755,149 - PP_1558 0.60 +0.2
1,755,151 + PP_1558 0.61 +0.9
1,755,152 - PP_1558 0.61 -0.4
1,755,152 - PP_1558 0.61 -0.8
1,755,152 - PP_1558 0.61 +0.6
1,755,152 - PP_1558 0.61 +1.6
1,755,152 - PP_1558 0.61 +0.4
1,755,152 - PP_1558 0.61 +0.5
1,755,152 - PP_1558 0.61 +0.8
1,755,152 - PP_1558 0.61 -0.4
1,755,264 + +0.5
1,755,265 - -1.3
1,755,265 - -0.1
1,755,265 - +0.4
1,755,305 + -0.6
1,755,317 + -0.2
1,755,368 + +1.0
1,755,369 - -0.1
1,755,563 + PP_1559 0.24 -0.2
1,755,563 + PP_1559 0.24 -1.5
1,755,563 + PP_1559 0.24 -0.2
1,755,564 - PP_1559 0.24 +0.8
1,755,608 + PP_1559 0.38 -1.0
1,755,608 + PP_1559 0.38 -0.6
1,755,609 - PP_1559 0.38 +0.7
1,755,609 - PP_1559 0.38 +1.0

Or see this region's nucleotide sequence