Strain Fitness in Pseudomonas putida KT2440 around PP_1417

Experiment: Growth at 25C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1416 and PP_1417 are separated by 1 nucleotidesPP_1417 and PP_1418 are separated by 172 nucleotides PP_1416: PP_1416 - putative Tricarboxylate transport protein TctA, at 1,615,744 to 1,617,258 _1416 PP_1417: PP_1417 - putative Tricarboxylate transport protein TctB, at 1,617,260 to 1,617,745 _1417 PP_1418: PP_1418 - putative Tricarboxylate transport protein TctC, at 1,617,918 to 1,618,898 _1418 Position (kb) 1617 1618Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1616.417 kb on + strand, within PP_1416at 1616.417 kb on + strand, within PP_1416at 1616.418 kb on - strand, within PP_1416at 1616.538 kb on + strand, within PP_1416at 1616.538 kb on + strand, within PP_1416at 1616.813 kb on + strand, within PP_1416at 1616.814 kb on - strand, within PP_1416at 1616.814 kb on - strand, within PP_1416at 1617.207 kb on - strandat 1617.242 kb on + strandat 1617.243 kb on - strandat 1617.243 kb on - strandat 1617.252 kb on + strandat 1617.561 kb on + strand, within PP_1417at 1617.561 kb on + strand, within PP_1417at 1617.561 kb on + strand, within PP_1417at 1617.561 kb on + strand, within PP_1417at 1617.562 kb on - strand, within PP_1417at 1617.627 kb on + strand, within PP_1417at 1617.628 kb on - strand, within PP_1417at 1617.646 kb on - strand, within PP_1417at 1617.646 kb on - strand, within PP_1417at 1617.646 kb on - strand, within PP_1417at 1617.804 kb on + strandat 1617.825 kb on + strandat 1617.826 kb on - strandat 1617.826 kb on - strandat 1617.826 kb on - strandat 1617.838 kb on - strandat 1617.919 kb on + strandat 1617.920 kb on - strandat 1617.955 kb on + strandat 1617.956 kb on - strandat 1617.956 kb on - strandat 1617.979 kb on + strandat 1617.979 kb on + strandat 1617.980 kb on - strandat 1617.980 kb on - strandat 1618.093 kb on + strand, within PP_1418at 1618.093 kb on + strand, within PP_1418at 1618.093 kb on + strand, within PP_1418at 1618.123 kb on + strand, within PP_1418at 1618.124 kb on - strand, within PP_1418at 1618.348 kb on + strand, within PP_1418at 1618.495 kb on + strand, within PP_1418at 1618.496 kb on - strand, within PP_1418at 1618.528 kb on + strand, within PP_1418at 1618.528 kb on + strand, within PP_1418at 1618.529 kb on - strand, within PP_1418at 1618.602 kb on - strand, within PP_1418at 1618.672 kb on + strand, within PP_1418at 1618.673 kb on - strand, within PP_1418at 1618.702 kb on + strand, within PP_1418at 1618.702 kb on + strand, within PP_1418at 1618.702 kb on + strand, within PP_1418at 1618.702 kb on + strand, within PP_1418at 1618.703 kb on - strand, within PP_1418at 1618.703 kb on - strand, within PP_1418at 1618.703 kb on - strand, within PP_1418at 1618.703 kb on - strand, within PP_1418at 1618.740 kb on + strand, within PP_1418at 1618.740 kb on + strand, within PP_1418at 1618.741 kb on - strand, within PP_1418

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C; with MOPS
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1,616,417 + PP_1416 0.44 +0.1
1,616,417 + PP_1416 0.44 -1.3
1,616,418 - PP_1416 0.44 -0.8
1,616,538 + PP_1416 0.52 -1.0
1,616,538 + PP_1416 0.52 -1.5
1,616,813 + PP_1416 0.71 +0.2
1,616,814 - PP_1416 0.71 -1.1
1,616,814 - PP_1416 0.71 +1.7
1,617,207 - +0.7
1,617,242 + -0.4
1,617,243 - -0.8
1,617,243 - -0.4
1,617,252 + +0.4
1,617,561 + PP_1417 0.62 -0.8
1,617,561 + PP_1417 0.62 +0.6
1,617,561 + PP_1417 0.62 +0.5
1,617,561 + PP_1417 0.62 +0.4
1,617,562 - PP_1417 0.62 -2.6
1,617,627 + PP_1417 0.76 +0.5
1,617,628 - PP_1417 0.76 +0.6
1,617,646 - PP_1417 0.79 +0.4
1,617,646 - PP_1417 0.79 +0.5
1,617,646 - PP_1417 0.79 +2.0
1,617,804 + -0.3
1,617,825 + -2.9
1,617,826 - -2.8
1,617,826 - -1.3
1,617,826 - +1.3
1,617,838 - -0.0
1,617,919 + -0.2
1,617,920 - +0.0
1,617,955 + -0.5
1,617,956 - +0.4
1,617,956 - +0.6
1,617,979 + +0.7
1,617,979 + -0.4
1,617,980 - -0.4
1,617,980 - -0.9
1,618,093 + PP_1418 0.18 +0.2
1,618,093 + PP_1418 0.18 -1.4
1,618,093 + PP_1418 0.18 -0.3
1,618,123 + PP_1418 0.21 -2.4
1,618,124 - PP_1418 0.21 -0.7
1,618,348 + PP_1418 0.44 -1.4
1,618,495 + PP_1418 0.59 -0.3
1,618,496 - PP_1418 0.59 -1.2
1,618,528 + PP_1418 0.62 -1.6
1,618,528 + PP_1418 0.62 +1.9
1,618,529 - PP_1418 0.62 +0.5
1,618,602 - PP_1418 0.70 -1.0
1,618,672 + PP_1418 0.77 +0.3
1,618,673 - PP_1418 0.77 +1.6
1,618,702 + PP_1418 0.80 +0.1
1,618,702 + PP_1418 0.80 -0.5
1,618,702 + PP_1418 0.80 -0.2
1,618,702 + PP_1418 0.80 -0.4
1,618,703 - PP_1418 0.80 +0.4
1,618,703 - PP_1418 0.80 +1.0
1,618,703 - PP_1418 0.80 +0.9
1,618,703 - PP_1418 0.80 -0.4
1,618,740 + PP_1418 0.84 +1.3
1,618,740 + PP_1418 0.84 +1.2
1,618,741 - PP_1418 0.84 +0.5

Or see this region's nucleotide sequence