Strain Fitness in Pseudomonas putida KT2440 around PP_1186

Experiment: Growth at 25C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1184 and PP_1185 are separated by 123 nucleotidesPP_1185 and PP_1186 are separated by 196 nucleotidesPP_1186 and PP_1187 overlap by 4 nucleotides PP_1184: PP_1184 - Dienelactone hydrolase family protein, at 1,359,214 to 1,360,011 _1184 PP_1185: PP_1185 - Outer membrane protein H1, at 1,360,135 to 1,360,740 _1185 PP_1186: PP_1186 - two component system DNA-binding transcriptional dual regulator, at 1,360,937 to 1,361,614 _1186 PP_1187: PP_1187 - sensor protein, at 1,361,611 to 1,362,957 _1187 Position (kb) 1360 1361 1362Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1359.947 kb on - strandat 1360.086 kb on + strandat 1360.086 kb on + strandat 1360.087 kb on - strandat 1360.091 kb on + strandat 1360.092 kb on - strandat 1360.092 kb on - strandat 1360.127 kb on - strandat 1360.231 kb on + strand, within PP_1185at 1360.231 kb on + strand, within PP_1185at 1360.232 kb on - strand, within PP_1185at 1360.304 kb on + strand, within PP_1185at 1360.306 kb on - strand, within PP_1185at 1360.306 kb on - strand, within PP_1185at 1360.324 kb on - strand, within PP_1185at 1360.369 kb on + strand, within PP_1185at 1360.369 kb on + strand, within PP_1185at 1360.369 kb on + strand, within PP_1185at 1360.378 kb on + strand, within PP_1185at 1360.378 kb on + strand, within PP_1185at 1360.378 kb on + strand, within PP_1185at 1360.379 kb on - strand, within PP_1185at 1360.379 kb on - strand, within PP_1185at 1360.379 kb on - strand, within PP_1185at 1360.379 kb on - strandat 1360.467 kb on + strand, within PP_1185at 1360.550 kb on - strand, within PP_1185at 1360.562 kb on - strand, within PP_1185at 1360.621 kb on + strand, within PP_1185at 1360.628 kb on - strand, within PP_1185at 1360.714 kb on + strandat 1360.714 kb on + strandat 1360.729 kb on + strandat 1360.729 kb on + strandat 1360.730 kb on - strandat 1360.730 kb on - strandat 1360.762 kb on + strandat 1360.848 kb on + strandat 1360.848 kb on + strandat 1360.849 kb on - strandat 1360.849 kb on - strandat 1360.874 kb on + strandat 1360.875 kb on - strandat 1360.918 kb on + strandat 1360.918 kb on + strandat 1360.918 kb on + strandat 1360.918 kb on + strandat 1360.918 kb on + strandat 1360.918 kb on + strandat 1360.918 kb on + strandat 1360.919 kb on - strandat 1360.919 kb on - strandat 1360.924 kb on + strandat 1360.924 kb on + strandat 1360.924 kb on + strandat 1360.925 kb on - strandat 1360.925 kb on - strandat 1360.925 kb on - strandat 1360.925 kb on - strandat 1360.986 kb on - strandat 1361.228 kb on + strand, within PP_1186at 1361.229 kb on - strand, within PP_1186at 1361.414 kb on + strand, within PP_1186at 1361.414 kb on + strand, within PP_1186at 1361.415 kb on - strand, within PP_1186at 1361.472 kb on - strandat 1361.588 kb on + strandat 1361.589 kb on - strandat 1361.589 kb on - strandat 1361.828 kb on - strand, within PP_1187at 1361.839 kb on + strand, within PP_1187at 1361.839 kb on + strand, within PP_1187at 1361.857 kb on + strand, within PP_1187at 1361.857 kb on + strand, within PP_1187at 1361.858 kb on - strand, within PP_1187at 1361.858 kb on - strand, within PP_1187at 1361.859 kb on + strand, within PP_1187at 1361.859 kb on + strand, within PP_1187at 1361.860 kb on - strand, within PP_1187at 1361.860 kb on - strand, within PP_1187at 1361.860 kb on - strand, within PP_1187at 1361.923 kb on + strand, within PP_1187at 1361.923 kb on + strand, within PP_1187at 1361.995 kb on + strand, within PP_1187at 1361.996 kb on + strand, within PP_1187at 1361.996 kb on + strand, within PP_1187at 1361.996 kb on + strand, within PP_1187at 1362.011 kb on + strand, within PP_1187at 1362.012 kb on - strand, within PP_1187at 1362.056 kb on + strand, within PP_1187at 1362.057 kb on - strand, within PP_1187at 1362.057 kb on - strand, within PP_1187at 1362.057 kb on - strand, within PP_1187at 1362.074 kb on - strand, within PP_1187at 1362.074 kb on - strand, within PP_1187at 1362.109 kb on + strand, within PP_1187at 1362.273 kb on + strand, within PP_1187at 1362.326 kb on - strandat 1362.479 kb on - strand, within PP_1187at 1362.530 kb on + strand, within PP_1187at 1362.531 kb on - strand, within PP_1187at 1362.531 kb on - strand, within PP_1187

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C; with MOPS
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1,359,947 - +0.5
1,360,086 + +0.8
1,360,086 + -1.0
1,360,087 - +2.1
1,360,091 + +0.5
1,360,092 - -0.2
1,360,092 - +0.3
1,360,127 - -0.7
1,360,231 + PP_1185 0.16 +1.0
1,360,231 + PP_1185 0.16 -0.4
1,360,232 - PP_1185 0.16 -0.0
1,360,304 + PP_1185 0.28 -0.0
1,360,306 - PP_1185 0.28 -0.8
1,360,306 - PP_1185 0.28 -2.5
1,360,324 - PP_1185 0.31 +0.6
1,360,369 + PP_1185 0.39 +0.1
1,360,369 + PP_1185 0.39 +1.1
1,360,369 + PP_1185 0.39 -0.5
1,360,378 + PP_1185 0.40 +0.8
1,360,378 + PP_1185 0.40 +1.1
1,360,378 + PP_1185 0.40 -0.2
1,360,379 - PP_1185 0.40 +1.3
1,360,379 - PP_1185 0.40 -0.8
1,360,379 - PP_1185 0.40 -1.8
1,360,379 - -0.6
1,360,467 + PP_1185 0.55 -2.1
1,360,550 - PP_1185 0.68 -2.3
1,360,562 - PP_1185 0.70 -0.6
1,360,621 + PP_1185 0.80 -1.4
1,360,628 - PP_1185 0.81 -0.2
1,360,714 + +1.1
1,360,714 + +0.3
1,360,729 + +1.0
1,360,729 + -0.2
1,360,730 - -0.6
1,360,730 - -0.1
1,360,762 + +0.1
1,360,848 + +0.5
1,360,848 + -0.6
1,360,849 - +0.7
1,360,849 - -2.2
1,360,874 + -1.8
1,360,875 - -0.0
1,360,918 + -2.4
1,360,918 + -1.4
1,360,918 + -0.8
1,360,918 + +0.7
1,360,918 + -1.1
1,360,918 + -3.0
1,360,918 + +0.9
1,360,919 - -2.6
1,360,919 - -2.2
1,360,924 + +1.1
1,360,924 + +0.5
1,360,924 + +0.9
1,360,925 - -1.1
1,360,925 - -2.2
1,360,925 - -2.1
1,360,925 - +0.2
1,360,986 - -1.9
1,361,228 + PP_1186 0.43 +2.3
1,361,229 - PP_1186 0.43 +1.1
1,361,414 + PP_1186 0.70 -1.1
1,361,414 + PP_1186 0.70 +2.4
1,361,415 - PP_1186 0.71 +0.4
1,361,472 - +1.7
1,361,588 + -2.2
1,361,589 - -2.3
1,361,589 - -2.6
1,361,828 - PP_1187 0.16 -2.5
1,361,839 + PP_1187 0.17 -2.3
1,361,839 + PP_1187 0.17 -0.3
1,361,857 + PP_1187 0.18 +1.5
1,361,857 + PP_1187 0.18 -0.3
1,361,858 - PP_1187 0.18 -2.8
1,361,858 - PP_1187 0.18 +0.9
1,361,859 + PP_1187 0.18 +0.5
1,361,859 + PP_1187 0.18 -2.1
1,361,860 - PP_1187 0.18 -2.6
1,361,860 - PP_1187 0.18 -1.9
1,361,860 - PP_1187 0.18 -0.1
1,361,923 + PP_1187 0.23 +1.1
1,361,923 + PP_1187 0.23 -2.2
1,361,995 + PP_1187 0.29 +1.0
1,361,996 + PP_1187 0.29 +1.4
1,361,996 + PP_1187 0.29 -0.6
1,361,996 + PP_1187 0.29 -2.5
1,362,011 + PP_1187 0.30 -1.3
1,362,012 - PP_1187 0.30 -1.6
1,362,056 + PP_1187 0.33 +1.5
1,362,057 - PP_1187 0.33 -0.4
1,362,057 - PP_1187 0.33 -1.6
1,362,057 - PP_1187 0.33 -1.2
1,362,074 - PP_1187 0.34 +1.8
1,362,074 - PP_1187 0.34 +0.4
1,362,109 + PP_1187 0.37 -0.2
1,362,273 + PP_1187 0.49 +1.0
1,362,326 - -0.6
1,362,479 - PP_1187 0.64 -2.1
1,362,530 + PP_1187 0.68 -0.7
1,362,531 - PP_1187 0.68 +0.9
1,362,531 - PP_1187 0.68 -0.2

Or see this region's nucleotide sequence