Experiment: Growth at 25C; with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5052 and PP_5053 are separated by 155 nucleotides PP_5053 and PP_5054 are separated by 39 nucleotides PP_5054 and PP_5055 are separated by 1 nucleotides PP_5055 and PP_5056 are separated by 207 nucleotides
PP_5052: PP_5052 - tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent, at 5,758,918 to 5,759,391
_5052
PP_5053: PP_5053 - Protein-export protein SecB, at 5,759,547 to 5,760,032
_5053
PP_5054: PP_5054 - glutaredoxin 3, at 5,760,072 to 5,760,326
_5054
PP_5055: PP_5055 - Sulfurtransferase, at 5,760,328 to 5,760,741
_5055
PP_5056: PP_5056 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 5,760,949 to 5,762,484
_5056
Position (kb) 5760
5761 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5759.089 kb on + strand, within PP_5052 at 5759.164 kb on - strand, within PP_5052 at 5759.335 kb on - strand, within PP_5052 at 5759.353 kb on + strand at 5759.354 kb on - strand at 5759.354 kb on - strand at 5759.354 kb on - strand at 5759.354 kb on - strand at 5759.354 kb on - strand at 5759.433 kb on + strand at 5759.477 kb on + strand at 5759.545 kb on - strand at 5759.549 kb on - strand at 5759.549 kb on - strand at 5759.558 kb on + strand at 5759.559 kb on - strand at 5759.559 kb on - strand at 5759.582 kb on + strand at 5759.602 kb on + strand, within PP_5053 at 5759.603 kb on - strand, within PP_5053 at 5759.766 kb on - strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5760.043 kb on + strand at 5760.048 kb on + strand at 5760.048 kb on + strand at 5760.048 kb on + strand at 5760.118 kb on + strand, within PP_5054 at 5760.119 kb on - strand, within PP_5054 at 5760.119 kb on - strand, within PP_5054 at 5760.119 kb on - strand, within PP_5054 at 5760.269 kb on - strand, within PP_5054 at 5760.296 kb on - strand, within PP_5054 at 5760.307 kb on + strand at 5760.326 kb on + strand at 5760.326 kb on + strand at 5760.326 kb on + strand at 5760.327 kb on - strand at 5760.327 kb on - strand at 5760.327 kb on - strand at 5760.327 kb on - strand at 5760.395 kb on + strand, within PP_5055 at 5760.395 kb on + strand, within PP_5055 at 5760.474 kb on + strand, within PP_5055 at 5760.540 kb on + strand, within PP_5055 at 5760.541 kb on - strand, within PP_5055 at 5760.541 kb on - strand, within PP_5055 at 5760.554 kb on + strand, within PP_5055 at 5760.555 kb on - strand, within PP_5055 at 5760.704 kb on + strand at 5760.704 kb on + strand at 5760.704 kb on + strand at 5760.705 kb on - strand at 5760.705 kb on - strand at 5760.705 kb on - strand at 5760.705 kb on - strand at 5760.779 kb on + strand at 5760.779 kb on + strand at 5760.779 kb on + strand at 5760.779 kb on + strand at 5760.779 kb on + strand at 5760.780 kb on - strand at 5760.780 kb on - strand at 5760.780 kb on - strand at 5760.780 kb on - strand at 5760.780 kb on - strand at 5760.876 kb on + strand at 5760.877 kb on - strand at 5760.877 kb on - strand at 5760.894 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 25C; with MOPS remove 5,759,089 + PP_5052 0.36 +0.0 5,759,164 - PP_5052 0.52 +0.4 5,759,335 - PP_5052 0.88 -1.2 5,759,353 + -3.1 5,759,354 - +0.8 5,759,354 - -2.0 5,759,354 - +1.4 5,759,354 - -3.4 5,759,354 - +1.1 5,759,433 + -3.2 5,759,477 + +1.3 5,759,545 - +0.2 5,759,549 - +0.7 5,759,549 - +0.8 5,759,558 + +0.2 5,759,559 - +0.2 5,759,559 - -0.6 5,759,582 + +0.7 5,759,602 + PP_5053 0.11 -1.1 5,759,603 - PP_5053 0.12 -0.3 5,759,766 - PP_5053 0.45 +0.3 5,759,962 + PP_5053 0.85 +0.6 5,759,962 + PP_5053 0.85 +0.1 5,759,962 + PP_5053 0.85 +0.6 5,759,962 + +0.0 5,759,962 + PP_5053 0.85 -3.0 5,759,962 + PP_5053 0.85 -1.1 5,759,962 + PP_5053 0.85 -3.5 5,759,962 + PP_5053 0.85 +0.5 5,759,962 + PP_5053 0.85 +1.3 5,759,962 + PP_5053 0.85 +0.2 5,759,963 - PP_5053 0.86 +1.2 5,759,963 - PP_5053 0.86 +0.9 5,759,963 - PP_5053 0.86 +1.6 5,759,963 - PP_5053 0.86 +0.0 5,759,963 - PP_5053 0.86 +0.3 5,759,963 - PP_5053 0.86 +0.2 5,759,963 - PP_5053 0.86 -0.1 5,760,043 + +0.1 5,760,048 + +0.6 5,760,048 + +0.5 5,760,048 + -0.0 5,760,118 + PP_5054 0.18 -2.7 5,760,119 - PP_5054 0.18 -1.8 5,760,119 - PP_5054 0.18 -0.1 5,760,119 - PP_5054 0.18 +1.0 5,760,269 - PP_5054 0.77 +2.8 5,760,296 - PP_5054 0.88 -0.2 5,760,307 + +1.3 5,760,326 + +0.1 5,760,326 + -0.1 5,760,326 + +1.2 5,760,327 - +0.9 5,760,327 - +0.6 5,760,327 - +0.4 5,760,327 - +1.4 5,760,395 + PP_5055 0.16 +0.5 5,760,395 + PP_5055 0.16 -0.3 5,760,474 + PP_5055 0.35 -1.1 5,760,540 + PP_5055 0.51 +1.0 5,760,541 - PP_5055 0.51 -1.2 5,760,541 - PP_5055 0.51 -0.9 5,760,554 + PP_5055 0.55 +1.3 5,760,555 - PP_5055 0.55 -0.6 5,760,704 + -2.6 5,760,704 + +0.1 5,760,704 + -3.8 5,760,705 - -2.3 5,760,705 - +3.6 5,760,705 - -3.2 5,760,705 - -1.4 5,760,779 + -0.2 5,760,779 + +1.1 5,760,779 + -2.1 5,760,779 + +1.6 5,760,779 + -1.5 5,760,780 - +0.8 5,760,780 - +1.4 5,760,780 - +1.4 5,760,780 - -0.8 5,760,780 - +1.6 5,760,876 + +1.6 5,760,877 - -3.6 5,760,877 - -3.3 5,760,894 + +3.3
Or see this region's nucleotide sequence