Strain Fitness in Pseudomonas putida KT2440 around PP_5028

Experiment: Growth at 25C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5026 and PP_5027 are separated by 323 nucleotidesPP_5027 and PP_5028 overlap by 4 nucleotidesPP_5028 and PP_5029 are separated by 58 nucleotidesPP_5029 and PP_5030 are separated by 10 nucleotides PP_5026: PP_5026 - Glucans biosynthesis protein G, at 5,726,958 to 5,728,637 _5026 PP_5027: PP_5027 - D-tyrosyl-tRNA(Tyr) deacylase, at 5,728,961 to 5,729,398 _5027 PP_5028: PP_5028 - proline iminopeptidase, at 5,729,395 to 5,730,477 _5028 PP_5029: PP_5029 - N-formylglutamate deformylase, at 5,730,536 to 5,731,339 _5029 PP_5030: PP_5030 - Imidazolonepropionase, at 5,731,350 to 5,732,555 _5030 Position (kb) 5729 5730 5731Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 5728.405 kb on + strand, within PP_5026at 5728.405 kb on + strand, within PP_5026at 5728.406 kb on - strand, within PP_5026at 5728.406 kb on - strand, within PP_5026at 5728.650 kb on + strandat 5728.688 kb on + strandat 5728.787 kb on - strandat 5728.839 kb on + strandat 5728.839 kb on + strandat 5728.840 kb on - strandat 5728.840 kb on - strandat 5728.909 kb on + strandat 5728.909 kb on + strandat 5728.909 kb on + strandat 5728.910 kb on - strandat 5728.910 kb on - strandat 5728.910 kb on - strandat 5728.910 kb on - strandat 5728.910 kb on - strandat 5728.913 kb on + strandat 5728.918 kb on + strandat 5728.964 kb on + strandat 5728.965 kb on - strandat 5728.965 kb on - strandat 5728.975 kb on + strandat 5728.975 kb on + strandat 5729.039 kb on + strand, within PP_5027at 5729.077 kb on - strand, within PP_5027at 5729.177 kb on + strand, within PP_5027at 5729.576 kb on + strand, within PP_5028at 5729.669 kb on + strand, within PP_5028at 5729.882 kb on + strand, within PP_5028at 5729.882 kb on + strand, within PP_5028at 5729.882 kb on + strand, within PP_5028at 5729.882 kb on + strand, within PP_5028at 5729.882 kb on + strand, within PP_5028at 5729.883 kb on - strand, within PP_5028at 5729.894 kb on + strand, within PP_5028at 5729.894 kb on + strand, within PP_5028at 5729.927 kb on + strand, within PP_5028at 5730.064 kb on + strand, within PP_5028at 5730.064 kb on + strand, within PP_5028at 5730.185 kb on + strand, within PP_5028at 5730.203 kb on + strand, within PP_5028at 5730.203 kb on + strand, within PP_5028at 5730.293 kb on + strand, within PP_5028at 5730.293 kb on + strand, within PP_5028at 5730.294 kb on - strand, within PP_5028at 5730.294 kb on - strand, within PP_5028at 5730.387 kb on + strandat 5730.387 kb on + strandat 5730.387 kb on + strandat 5730.408 kb on - strandat 5730.546 kb on + strandat 5730.546 kb on + strandat 5730.547 kb on - strandat 5730.547 kb on - strandat 5730.581 kb on + strandat 5730.581 kb on + strandat 5730.582 kb on - strandat 5730.593 kb on + strandat 5730.594 kb on - strandat 5730.652 kb on + strand, within PP_5029at 5730.652 kb on + strand, within PP_5029at 5730.652 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.655 kb on - strand, within PP_5029at 5730.655 kb on - strand, within PP_5029at 5730.655 kb on - strand, within PP_5029at 5730.655 kb on - strand, within PP_5029at 5730.655 kb on - strand, within PP_5029at 5730.655 kb on - strand, within PP_5029at 5730.691 kb on + strand, within PP_5029at 5730.691 kb on + strand, within PP_5029at 5730.691 kb on + strand, within PP_5029at 5730.692 kb on - strand, within PP_5029at 5730.712 kb on - strand, within PP_5029at 5730.748 kb on + strand, within PP_5029at 5730.748 kb on + strand, within PP_5029at 5730.749 kb on - strand, within PP_5029at 5730.762 kb on + strand, within PP_5029at 5730.762 kb on + strand, within PP_5029at 5730.835 kb on + strand, within PP_5029at 5730.835 kb on + strand, within PP_5029at 5730.918 kb on + strand, within PP_5029at 5730.919 kb on - strand, within PP_5029at 5730.958 kb on + strand, within PP_5029at 5730.958 kb on + strand, within PP_5029at 5730.958 kb on + strand, within PP_5029at 5730.959 kb on - strand, within PP_5029at 5730.969 kb on + strand, within PP_5029at 5730.969 kb on + strand, within PP_5029at 5730.994 kb on - strand, within PP_5029at 5731.092 kb on + strand, within PP_5029at 5731.093 kb on - strand, within PP_5029at 5731.143 kb on + strand, within PP_5029at 5731.144 kb on - strand, within PP_5029at 5731.188 kb on + strand, within PP_5029at 5731.188 kb on + strand, within PP_5029at 5731.189 kb on - strand, within PP_5029at 5731.328 kb on + strandat 5731.328 kb on + strandat 5731.329 kb on - strandat 5731.329 kb on - strandat 5731.329 kb on - strandat 5731.329 kb on - strandat 5731.380 kb on + strandat 5731.411 kb on + strandat 5731.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C; with MOPS
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5,728,405 + PP_5026 0.86 -0.6
5,728,405 + PP_5026 0.86 -0.6
5,728,406 - PP_5026 0.86 -0.6
5,728,406 - PP_5026 0.86 -2.0
5,728,650 + +0.2
5,728,688 + -0.2
5,728,787 - -5.0
5,728,839 + -0.3
5,728,839 + -0.6
5,728,840 - -0.9
5,728,840 - -1.6
5,728,909 + -0.1
5,728,909 + -0.6
5,728,909 + -2.7
5,728,910 - -0.1
5,728,910 - +1.7
5,728,910 - +0.8
5,728,910 - +1.0
5,728,910 - +0.2
5,728,913 + -1.5
5,728,918 + -0.6
5,728,964 + -2.5
5,728,965 - +1.2
5,728,965 - -0.9
5,728,975 + +1.6
5,728,975 + +1.0
5,729,039 + PP_5027 0.18 -0.8
5,729,077 - PP_5027 0.26 -2.4
5,729,177 + PP_5027 0.49 +0.7
5,729,576 + PP_5028 0.17 -0.3
5,729,669 + PP_5028 0.25 -1.1
5,729,882 + PP_5028 0.45 -1.5
5,729,882 + PP_5028 0.45 +0.0
5,729,882 + PP_5028 0.45 -1.4
5,729,882 + PP_5028 0.45 -0.3
5,729,882 + PP_5028 0.45 -1.7
5,729,883 - PP_5028 0.45 -0.3
5,729,894 + PP_5028 0.46 -1.1
5,729,894 + PP_5028 0.46 +0.7
5,729,927 + PP_5028 0.49 -1.9
5,730,064 + PP_5028 0.62 -1.0
5,730,064 + PP_5028 0.62 -1.7
5,730,185 + PP_5028 0.73 -1.7
5,730,203 + PP_5028 0.75 -0.5
5,730,203 + PP_5028 0.75 -1.0
5,730,293 + PP_5028 0.83 -2.2
5,730,293 + PP_5028 0.83 -1.5
5,730,294 - PP_5028 0.83 +0.0
5,730,294 - PP_5028 0.83 -0.3
5,730,387 + -2.0
5,730,387 + -0.3
5,730,387 + +3.0
5,730,408 - -0.3
5,730,546 + +0.5
5,730,546 + -2.8
5,730,547 - +0.3
5,730,547 - +1.7
5,730,581 + +0.5
5,730,581 + +0.0
5,730,582 - -0.3
5,730,593 + +0.3
5,730,594 - -0.6
5,730,652 + PP_5029 0.14 -1.8
5,730,652 + PP_5029 0.14 -1.8
5,730,652 + PP_5029 0.14 -3.4
5,730,654 + PP_5029 0.15 +1.7
5,730,654 + PP_5029 0.15 +0.8
5,730,654 + PP_5029 0.15 +2.1
5,730,654 + PP_5029 0.15 +0.2
5,730,654 + PP_5029 0.15 -2.4
5,730,654 + PP_5029 0.15 +0.2
5,730,654 + PP_5029 0.15 +0.4
5,730,654 + PP_5029 0.15 +2.5
5,730,654 + PP_5029 0.15 +0.8
5,730,655 - PP_5029 0.15 +0.6
5,730,655 - PP_5029 0.15 -4.0
5,730,655 - PP_5029 0.15 -3.5
5,730,655 - PP_5029 0.15 +0.9
5,730,655 - PP_5029 0.15 -0.3
5,730,655 - PP_5029 0.15 -0.8
5,730,691 + PP_5029 0.19 -0.8
5,730,691 + PP_5029 0.19 -3.8
5,730,691 + PP_5029 0.19 -1.7
5,730,692 - PP_5029 0.19 -0.7
5,730,712 - PP_5029 0.22 -2.5
5,730,748 + PP_5029 0.26 -0.9
5,730,748 + PP_5029 0.26 +0.6
5,730,749 - PP_5029 0.26 -2.9
5,730,762 + PP_5029 0.28 +1.0
5,730,762 + PP_5029 0.28 -0.1
5,730,835 + PP_5029 0.37 +2.1
5,730,835 + PP_5029 0.37 +0.4
5,730,918 + PP_5029 0.48 +1.3
5,730,919 - PP_5029 0.48 -1.2
5,730,958 + PP_5029 0.52 +0.6
5,730,958 + PP_5029 0.52 -0.0
5,730,958 + PP_5029 0.52 +0.1
5,730,959 - PP_5029 0.53 +0.3
5,730,969 + PP_5029 0.54 -3.5
5,730,969 + PP_5029 0.54 +0.4
5,730,994 - PP_5029 0.57 +0.9
5,731,092 + PP_5029 0.69 +1.8
5,731,093 - PP_5029 0.69 +0.7
5,731,143 + PP_5029 0.75 -0.9
5,731,144 - PP_5029 0.76 +1.2
5,731,188 + PP_5029 0.81 -0.5
5,731,188 + PP_5029 0.81 -0.2
5,731,189 - PP_5029 0.81 -0.4
5,731,328 + +0.0
5,731,328 + -3.0
5,731,329 - -2.0
5,731,329 - -0.1
5,731,329 - +0.3
5,731,329 - +1.0
5,731,380 + -0.4
5,731,411 + +1.2
5,731,412 - -0.7

Or see this region's nucleotide sequence