Experiment: Growth at 25C; with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1039 and PP_1040 overlap by 4 nucleotides PP_1040 and PP_1041 overlap by 1 nucleotides PP_1041 and PP_1042 are separated by 145 nucleotides PP_1042 and PP_1043 are separated by 129 nucleotides
PP_1039: PP_1039 - sec-independent protein translocase protein, at 1,189,052 to 1,189,813
_1039
PP_1040: PP_1040 - Sec-independent protein translocase TatB, at 1,189,810 to 1,190,100
_1040
PP_1041: PP_1041 - twin arginine protein export complex subunit, at 1,190,100 to 1,190,333
_1041
PP_1042: PP_1042 - Type II secretion system protein K, at 1,190,479 to 1,191,444
_1042
PP_1043: PP_1043 - putative phosphatase, at 1,191,574 to 1,193,649
_1043
Position (kb) 1190
1191
1192 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1189.667 kb on + strand, within PP_1039 at 1189.677 kb on + strand, within PP_1039 at 1189.677 kb on + strand, within PP_1039 at 1189.677 kb on + strand, within PP_1039 at 1189.678 kb on - strand, within PP_1039 at 1189.678 kb on - strand, within PP_1039 at 1189.678 kb on - strand, within PP_1039 at 1189.678 kb on - strand, within PP_1039 at 1190.271 kb on - strand, within PP_1041 at 1190.299 kb on - strand, within PP_1041 at 1190.349 kb on - strand at 1190.349 kb on - strand at 1190.349 kb on - strand at 1190.384 kb on + strand at 1190.421 kb on - strand at 1190.731 kb on + strand, within PP_1042 at 1190.842 kb on + strand, within PP_1042 at 1190.843 kb on - strand, within PP_1042 at 1190.847 kb on - strand, within PP_1042 at 1191.142 kb on + strand, within PP_1042 at 1191.142 kb on + strand, within PP_1042 at 1191.143 kb on - strand, within PP_1042 at 1191.143 kb on - strand, within PP_1042 at 1191.143 kb on - strand, within PP_1042 at 1191.396 kb on - strand at 1191.443 kb on - strand at 1191.460 kb on + strand at 1191.461 kb on - strand at 1191.679 kb on - strand at 1191.679 kb on - strand at 1191.680 kb on + strand at 1191.681 kb on - strand at 1191.742 kb on - strand at 1191.882 kb on - strand, within PP_1043 at 1192.169 kb on + strand, within PP_1043 at 1192.169 kb on + strand, within PP_1043 at 1192.171 kb on + strand, within PP_1043 at 1192.171 kb on + strand, within PP_1043 at 1192.171 kb on + strand, within PP_1043 at 1192.171 kb on + strand, within PP_1043 at 1192.171 kb on + strand, within PP_1043 at 1192.172 kb on - strand, within PP_1043 at 1192.172 kb on - strand, within PP_1043 at 1192.172 kb on - strand, within PP_1043 at 1192.283 kb on + strand, within PP_1043 at 1192.283 kb on + strand, within PP_1043 at 1192.284 kb on - strand, within PP_1043 at 1192.284 kb on - strand, within PP_1043 at 1192.342 kb on + strand, within PP_1043 at 1192.343 kb on - strand, within PP_1043 at 1192.343 kb on - strand, within PP_1043 at 1192.377 kb on - strand, within PP_1043 at 1192.377 kb on - strand, within PP_1043
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 25C; with MOPS remove 1,189,667 + PP_1039 0.81 -2.8 1,189,677 + PP_1039 0.82 +0.8 1,189,677 + PP_1039 0.82 -0.8 1,189,677 + PP_1039 0.82 +0.1 1,189,678 - PP_1039 0.82 -1.9 1,189,678 - PP_1039 0.82 +0.8 1,189,678 - PP_1039 0.82 +1.9 1,189,678 - PP_1039 0.82 -1.6 1,190,271 - PP_1041 0.73 -1.7 1,190,299 - PP_1041 0.85 -0.1 1,190,349 - +0.6 1,190,349 - -2.2 1,190,349 - +1.1 1,190,384 + -1.0 1,190,421 - +0.0 1,190,731 + PP_1042 0.26 -0.1 1,190,842 + PP_1042 0.38 +2.6 1,190,843 - PP_1042 0.38 -0.9 1,190,847 - PP_1042 0.38 +1.0 1,191,142 + PP_1042 0.69 +0.6 1,191,142 + PP_1042 0.69 +1.7 1,191,143 - PP_1042 0.69 -1.1 1,191,143 - PP_1042 0.69 +1.1 1,191,143 - PP_1042 0.69 +0.8 1,191,396 - -4.2 1,191,443 - +0.6 1,191,460 + +0.4 1,191,461 - -2.4 1,191,679 - +1.2 1,191,679 - -0.5 1,191,680 + -3.2 1,191,681 - -3.2 1,191,742 - -3.8 1,191,882 - PP_1043 0.15 +0.8 1,192,169 + PP_1043 0.29 -0.4 1,192,169 + PP_1043 0.29 +1.0 1,192,171 + PP_1043 0.29 -0.2 1,192,171 + PP_1043 0.29 -0.1 1,192,171 + PP_1043 0.29 +1.4 1,192,171 + PP_1043 0.29 +0.8 1,192,171 + PP_1043 0.29 +1.7 1,192,172 - PP_1043 0.29 +0.7 1,192,172 - PP_1043 0.29 +1.1 1,192,172 - PP_1043 0.29 -3.4 1,192,283 + PP_1043 0.34 +0.5 1,192,283 + PP_1043 0.34 +1.3 1,192,284 - PP_1043 0.34 -2.8 1,192,284 - PP_1043 0.34 -2.2 1,192,342 + PP_1043 0.37 -1.9 1,192,343 - PP_1043 0.37 +1.0 1,192,343 - PP_1043 0.37 +0.5 1,192,377 - PP_1043 0.39 -1.1 1,192,377 - PP_1043 0.39 +0.6
Or see this region's nucleotide sequence