Strain Fitness in Pseudomonas putida KT2440 around PP_0995

Experiment: Growth at 25C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0993 and PP_0994 are separated by 271 nucleotidesPP_0994 and PP_0995 overlap by 11 nucleotidesPP_0995 and PP_0996 are separated by 77 nucleotides PP_0993: PP_0993 - conserved exported protein of unknown function, at 1,132,329 to 1,132,616 _0993 PP_0994: PP_0994 - putative RNA polymerase sigma factor, at 1,132,888 to 1,133,424 _0994 PP_0995: PP_0995 - conserved membrane protein of unknown function, at 1,133,414 to 1,134,055 _0995 PP_0996: PP_0996 - glutamate:sodium symporter, at 1,134,133 to 1,135,338 _0996 Position (kb) 1133 1134 1135Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1132.647 kb on + strandat 1132.668 kb on - strandat 1132.668 kb on - strandat 1132.684 kb on - strandat 1132.684 kb on - strandat 1132.761 kb on + strandat 1132.761 kb on + strandat 1132.762 kb on - strandat 1132.762 kb on - strandat 1132.762 kb on - strandat 1132.814 kb on + strandat 1132.825 kb on + strandat 1132.825 kb on + strandat 1132.826 kb on - strandat 1132.826 kb on - strandat 1132.852 kb on - strandat 1132.933 kb on + strandat 1132.933 kb on + strandat 1132.934 kb on - strandat 1132.967 kb on + strand, within PP_0994at 1132.967 kb on + strand, within PP_0994at 1132.967 kb on + strand, within PP_0994at 1132.967 kb on + strand, within PP_0994at 1132.967 kb on + strand, within PP_0994at 1132.968 kb on - strand, within PP_0994at 1132.968 kb on - strand, within PP_0994at 1132.968 kb on - strand, within PP_0994at 1132.968 kb on - strand, within PP_0994at 1133.036 kb on + strand, within PP_0994at 1133.037 kb on - strand, within PP_0994at 1133.066 kb on - strand, within PP_0994at 1133.363 kb on + strandat 1133.364 kb on - strand, within PP_0994at 1133.536 kb on + strand, within PP_0995at 1133.536 kb on + strand, within PP_0995at 1133.536 kb on + strand, within PP_0995at 1133.536 kb on + strand, within PP_0995at 1133.537 kb on - strand, within PP_0995at 1133.537 kb on - strand, within PP_0995at 1133.539 kb on + strand, within PP_0995at 1133.540 kb on - strand, within PP_0995at 1133.540 kb on - strand, within PP_0995at 1133.540 kb on - strand, within PP_0995at 1133.563 kb on + strand, within PP_0995at 1133.797 kb on + strand, within PP_0995at 1133.812 kb on + strand, within PP_0995at 1133.987 kb on + strand, within PP_0995at 1134.053 kb on + strandat 1134.054 kb on - strandat 1134.054 kb on - strandat 1134.135 kb on - strandat 1134.164 kb on + strandat 1134.164 kb on + strandat 1134.252 kb on - strandat 1134.294 kb on + strand, within PP_0996at 1134.295 kb on - strand, within PP_0996at 1134.295 kb on - strand, within PP_0996at 1134.295 kb on - strand, within PP_0996at 1134.359 kb on - strand, within PP_0996at 1134.359 kb on - strand, within PP_0996at 1134.420 kb on + strand, within PP_0996at 1134.421 kb on - strand, within PP_0996at 1134.421 kb on - strand, within PP_0996at 1134.430 kb on + strand, within PP_0996at 1134.431 kb on - strand, within PP_0996at 1134.540 kb on - strand, within PP_0996at 1134.575 kb on - strand, within PP_0996at 1134.575 kb on - strand, within PP_0996at 1134.589 kb on + strand, within PP_0996at 1134.640 kb on - strand, within PP_0996at 1134.643 kb on + strand, within PP_0996at 1134.644 kb on - strand, within PP_0996at 1134.672 kb on + strand, within PP_0996at 1134.672 kb on + strand, within PP_0996at 1134.672 kb on + strand, within PP_0996at 1134.673 kb on - strand, within PP_0996at 1134.673 kb on - strand, within PP_0996at 1134.673 kb on - strand, within PP_0996at 1134.688 kb on + strand, within PP_0996at 1134.688 kb on + strand, within PP_0996at 1135.027 kb on + strand, within PP_0996at 1135.027 kb on + strand, within PP_0996at 1135.027 kb on + strand, within PP_0996at 1135.028 kb on - strand, within PP_0996

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C; with MOPS
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1,132,647 + -2.0
1,132,668 - -0.8
1,132,668 - +0.4
1,132,684 - -1.2
1,132,684 - -2.7
1,132,761 + -0.2
1,132,761 + +1.2
1,132,762 - -0.1
1,132,762 - +0.2
1,132,762 - +1.3
1,132,814 + +0.4
1,132,825 + +1.7
1,132,825 + +0.5
1,132,826 - +0.9
1,132,826 - -0.5
1,132,852 - -1.1
1,132,933 + -0.8
1,132,933 + -2.5
1,132,934 - +0.6
1,132,967 + PP_0994 0.15 -1.6
1,132,967 + PP_0994 0.15 -3.5
1,132,967 + PP_0994 0.15 +0.6
1,132,967 + PP_0994 0.15 +0.6
1,132,967 + PP_0994 0.15 +0.5
1,132,968 - PP_0994 0.15 -0.4
1,132,968 - PP_0994 0.15 +2.4
1,132,968 - PP_0994 0.15 -0.6
1,132,968 - PP_0994 0.15 -0.3
1,133,036 + PP_0994 0.28 -2.0
1,133,037 - PP_0994 0.28 -2.8
1,133,066 - PP_0994 0.33 +0.4
1,133,363 + +1.8
1,133,364 - PP_0994 0.89 -0.4
1,133,536 + PP_0995 0.19 +1.1
1,133,536 + PP_0995 0.19 +1.2
1,133,536 + PP_0995 0.19 +0.8
1,133,536 + PP_0995 0.19 +0.6
1,133,537 - PP_0995 0.19 +2.4
1,133,537 - PP_0995 0.19 +1.8
1,133,539 + PP_0995 0.19 -0.8
1,133,540 - PP_0995 0.20 +0.1
1,133,540 - PP_0995 0.20 +1.6
1,133,540 - PP_0995 0.20 -0.2
1,133,563 + PP_0995 0.23 +1.2
1,133,797 + PP_0995 0.60 +0.7
1,133,812 + PP_0995 0.62 +1.1
1,133,987 + PP_0995 0.89 -0.2
1,134,053 + -3.9
1,134,054 - +2.0
1,134,054 - -0.1
1,134,135 - -0.8
1,134,164 + +0.9
1,134,164 + -0.4
1,134,252 - -0.0
1,134,294 + PP_0996 0.13 -3.0
1,134,295 - PP_0996 0.13 +0.3
1,134,295 - PP_0996 0.13 -2.0
1,134,295 - PP_0996 0.13 +0.7
1,134,359 - PP_0996 0.19 -0.9
1,134,359 - PP_0996 0.19 -0.1
1,134,420 + PP_0996 0.24 +0.3
1,134,421 - PP_0996 0.24 +0.4
1,134,421 - PP_0996 0.24 +1.0
1,134,430 + PP_0996 0.25 -0.5
1,134,431 - PP_0996 0.25 +0.0
1,134,540 - PP_0996 0.34 +0.6
1,134,575 - PP_0996 0.37 +1.8
1,134,575 - PP_0996 0.37 -0.1
1,134,589 + PP_0996 0.38 -2.9
1,134,640 - PP_0996 0.42 +1.1
1,134,643 + PP_0996 0.42 +0.3
1,134,644 - PP_0996 0.42 -1.0
1,134,672 + PP_0996 0.45 +0.7
1,134,672 + PP_0996 0.45 +1.6
1,134,672 + PP_0996 0.45 +1.1
1,134,673 - PP_0996 0.45 -0.4
1,134,673 - PP_0996 0.45 +0.6
1,134,673 - PP_0996 0.45 +0.2
1,134,688 + PP_0996 0.46 +1.2
1,134,688 + PP_0996 0.46 +1.2
1,135,027 + PP_0996 0.74 +0.0
1,135,027 + PP_0996 0.74 +0.9
1,135,027 + PP_0996 0.74 -0.9
1,135,028 - PP_0996 0.74 +1.5

Or see this region's nucleotide sequence