Strain Fitness in Pseudomonas putida KT2440 around PP_0834

Experiment: Growth at 25C; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0833 and PP_0834 are separated by 42 nucleotidesPP_0834 and PP_0835 are separated by 63 nucleotides PP_0833: PP_0833 - queuine tRNA-ribosyltransferase, at 970,152 to 971,267 _0833 PP_0834: PP_0834 - Sec translocation complex subunit YajC, at 971,310 to 971,645 _0834 PP_0835: PP_0835 - Sec Translocation Complex SecD subunit, at 971,709 to 973,571 _0835 Position (kb) 971 972Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 970.435 kb on + strand, within PP_0833at 970.567 kb on + strand, within PP_0833at 970.716 kb on + strand, within PP_0833at 970.955 kb on + strand, within PP_0833at 970.985 kb on + strand, within PP_0833at 971.060 kb on + strand, within PP_0833at 971.085 kb on + strand, within PP_0833at 971.135 kb on + strand, within PP_0833at 971.201 kb on + strandat 971.298 kb on + strandat 971.298 kb on + strandat 971.298 kb on + strandat 971.418 kb on + strand, within PP_0834at 971.418 kb on + strand, within PP_0834at 971.418 kb on + strand, within PP_0834at 971.639 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C; with MOPS
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970,435 + PP_0833 0.25 -0.8
970,567 + PP_0833 0.37 +1.8
970,716 + PP_0833 0.51 +2.5
970,955 + PP_0833 0.72 +1.8
970,985 + PP_0833 0.75 -0.2
971,060 + PP_0833 0.81 -1.2
971,085 + PP_0833 0.84 +0.8
971,135 + PP_0833 0.88 +1.8
971,201 + +0.2
971,298 + -2.5
971,298 + +0.8
971,298 + -1.3
971,418 + PP_0834 0.32 -3.4
971,418 + PP_0834 0.32 -3.1
971,418 + PP_0834 0.32 -1.4
971,639 + -0.0

Or see this region's nucleotide sequence