Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26900 and PS417_26905 are separated by 96 nucleotides PS417_26905 and PS417_26910 are separated by 69 nucleotides PS417_26910 and PS417_26915 overlap by 8 nucleotides
PS417_26900: PS417_26900 - L-cystine transporter tcyP, at 5,809,263 to 5,810,654
_26900
PS417_26905: PS417_26905 - diacylglycerol kinase, at 5,810,751 to 5,811,263
_26905
PS417_26910: PS417_26910 - membrane protein, at 5,811,333 to 5,812,703
_26910
PS417_26915: PS417_26915 - GTPase SAR1, at 5,812,696 to 5,814,063
_26915
Position (kb) 5811
5812
5813 Strain fitness (log2 ratio) -1
0
1 at 5810.606 kb on + strand at 5810.753 kb on - strand at 5811.298 kb on + strand at 5811.740 kb on - strand, within PS417_26910 at 5811.805 kb on + strand, within PS417_26910 at 5811.805 kb on + strand, within PS417_26910 at 5811.899 kb on + strand, within PS417_26910 at 5811.899 kb on + strand, within PS417_26910 at 5811.900 kb on - strand, within PS417_26910 at 5811.960 kb on - strand, within PS417_26910 at 5812.119 kb on + strand, within PS417_26910 at 5812.120 kb on - strand, within PS417_26910 at 5812.120 kb on - strand, within PS417_26910 at 5812.701 kb on + strand at 5812.702 kb on - strand at 5812.871 kb on - strand, within PS417_26915 at 5813.056 kb on + strand, within PS417_26915 at 5813.272 kb on + strand, within PS417_26915 at 5813.273 kb on - strand, within PS417_26915
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 5,810,606 + -0.4 5,810,753 - -0.4 5,811,298 + +1.2 5,811,740 - PS417_26910 0.30 -1.6 5,811,805 + PS417_26910 0.34 +0.9 5,811,805 + PS417_26910 0.34 -0.3 5,811,899 + PS417_26910 0.41 -1.0 5,811,899 + PS417_26910 0.41 -0.2 5,811,900 - PS417_26910 0.41 -0.2 5,811,960 - PS417_26910 0.46 -0.4 5,812,119 + PS417_26910 0.57 -1.0 5,812,120 - PS417_26910 0.57 -0.5 5,812,120 - PS417_26910 0.57 -0.7 5,812,701 + -0.2 5,812,702 - +0.2 5,812,871 - PS417_26915 0.13 -0.3 5,813,056 + PS417_26915 0.26 +0.9 5,813,272 + PS417_26915 0.42 -0.7 5,813,273 - PS417_26915 0.42 +1.2
Or see this region's nucleotide sequence