Strain Fitness in Pseudomonas simiae WCS417 around PS417_03725

Experiment: R2A with Vogels_fungal_media 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03720 and PS417_03725 are separated by 177 nucleotidesPS417_03725 and PS417_03730 are separated by 0 nucleotides PS417_03720: PS417_03720 - adenylylsulfate kinase, at 841,797 to 843,695 _03720 PS417_03725: PS417_03725 - acyltransferase, at 843,873 to 844,772 _03725 PS417_03730: PS417_03730 - phosphate acetyltransferase, at 844,773 to 846,872 _03730 Position (kb) 843 844 845Strain fitness (log2 ratio) -1 0 1at 843.818 kb on + strandat 843.818 kb on + strandat 843.818 kb on + strandat 843.819 kb on - strandat 843.985 kb on + strand, within PS417_03725at 844.062 kb on + strand, within PS417_03725at 844.252 kb on - strand, within PS417_03725at 844.465 kb on + strand, within PS417_03725at 844.517 kb on - strand, within PS417_03725at 844.517 kb on - strand, within PS417_03725at 844.529 kb on - strand, within PS417_03725at 844.758 kb on + strandat 844.774 kb on + strandat 844.774 kb on + strandat 844.778 kb on + strandat 844.778 kb on + strandat 844.779 kb on - strandat 844.784 kb on + strandat 844.785 kb on - strandat 844.785 kb on - strandat 844.825 kb on + strandat 844.975 kb on - strandat 845.047 kb on + strand, within PS417_03730at 845.156 kb on - strand, within PS417_03730at 845.388 kb on - strand, within PS417_03730

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X
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843,818 + -0.1
843,818 + +0.5
843,818 + +0.0
843,819 - +0.5
843,985 + PS417_03725 0.12 -0.4
844,062 + PS417_03725 0.21 -0.8
844,252 - PS417_03725 0.42 -0.5
844,465 + PS417_03725 0.66 -0.1
844,517 - PS417_03725 0.72 -0.5
844,517 - PS417_03725 0.72 -1.4
844,529 - PS417_03725 0.73 -1.1
844,758 + +0.2
844,774 + +0.6
844,774 + -0.1
844,778 + +0.1
844,778 + -0.5
844,779 - +1.0
844,784 + -1.5
844,785 - -0.3
844,785 - -0.0
844,825 + -0.2
844,975 - +0.1
845,047 + PS417_03730 0.13 -1.1
845,156 - PS417_03730 0.18 +0.8
845,388 - PS417_03730 0.29 +0.1

Or see this region's nucleotide sequence