Strain Fitness in Pseudomonas simiae WCS417 around PS417_00230

Experiment: R2A with Vogels_fungal_media 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_00220 and PS417_00225 are separated by 0 nucleotidesPS417_00225 and PS417_00230 are separated by 142 nucleotidesPS417_00230 and PS417_00235 are separated by 86 nucleotidesPS417_00235 and PS417_00240 overlap by 4 nucleotides PS417_00220: PS417_00220 - hypothetical protein, at 43,943 to 44,182 _00220 PS417_00225: PS417_00225 - hypothetical protein, at 44,183 to 44,605 _00225 PS417_00230: PS417_00230 - aminopeptidase, at 44,748 to 45,791 _00230 PS417_00235: PS417_00235 - HAD family hydrolase, at 45,878 to 46,537 _00235 PS417_00240: PS417_00240 - anhydrase, at 46,534 to 47,076 _00240 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2at 43.841 kb on + strandat 43.841 kb on + strandat 43.841 kb on + strandat 43.841 kb on + strandat 43.841 kb on + strandat 43.842 kb on - strandat 43.845 kb on + strandat 43.846 kb on - strandat 43.852 kb on + strandat 43.885 kb on + strandat 43.885 kb on + strandat 43.885 kb on + strandat 43.885 kb on + strandat 43.886 kb on - strandat 43.886 kb on - strandat 43.887 kb on + strandat 43.892 kb on + strandat 43.893 kb on - strandat 43.893 kb on - strandat 43.902 kb on - strandat 43.977 kb on + strand, within PS417_00220at 44.070 kb on - strand, within PS417_00220at 44.246 kb on - strand, within PS417_00225at 44.283 kb on + strand, within PS417_00225at 44.283 kb on + strand, within PS417_00225at 44.284 kb on - strand, within PS417_00225at 44.337 kb on + strand, within PS417_00225at 44.338 kb on - strand, within PS417_00225at 44.631 kb on - strandat 44.631 kb on - strandat 44.631 kb on - strandat 44.631 kb on - strandat 44.664 kb on - strandat 44.669 kb on + strandat 44.669 kb on + strandat 44.670 kb on - strandat 44.670 kb on - strandat 44.670 kb on - strandat 44.670 kb on - strandat 44.671 kb on + strandat 44.671 kb on + strandat 44.671 kb on + strandat 44.672 kb on - strandat 44.672 kb on - strandat 44.672 kb on - strandat 44.672 kb on - strandat 44.672 kb on - strandat 44.811 kb on + strandat 44.812 kb on - strandat 44.812 kb on - strandat 44.991 kb on + strand, within PS417_00230at 45.013 kb on - strand, within PS417_00230at 45.108 kb on + strand, within PS417_00230at 45.109 kb on - strand, within PS417_00230at 45.109 kb on - strand, within PS417_00230at 45.173 kb on - strand, within PS417_00230at 45.189 kb on + strand, within PS417_00230at 45.190 kb on - strand, within PS417_00230at 45.297 kb on + strand, within PS417_00230at 45.297 kb on + strand, within PS417_00230at 45.298 kb on - strand, within PS417_00230at 45.298 kb on - strand, within PS417_00230at 45.395 kb on + strand, within PS417_00230at 45.395 kb on + strand, within PS417_00230at 45.586 kb on - strand, within PS417_00230at 45.642 kb on + strand, within PS417_00230at 45.642 kb on + strand, within PS417_00230at 45.643 kb on - strand, within PS417_00230at 45.643 kb on - strand, within PS417_00230at 45.875 kb on - strandat 45.892 kb on + strandat 46.137 kb on + strand, within PS417_00235at 46.137 kb on + strand, within PS417_00235at 46.218 kb on + strand, within PS417_00235at 46.218 kb on + strand, within PS417_00235at 46.218 kb on + strand, within PS417_00235at 46.219 kb on - strand, within PS417_00235at 46.288 kb on - strand, within PS417_00235at 46.360 kb on - strand, within PS417_00235at 46.468 kb on + strand, within PS417_00235at 46.580 kb on + strandat 46.595 kb on + strand, within PS417_00240at 46.654 kb on + strand, within PS417_00240at 46.654 kb on + strand, within PS417_00240at 46.654 kb on + strand, within PS417_00240at 46.654 kb on + strand, within PS417_00240at 46.654 kb on + strand, within PS417_00240at 46.655 kb on - strand, within PS417_00240at 46.655 kb on - strand, within PS417_00240at 46.658 kb on + strand, within PS417_00240at 46.658 kb on + strand, within PS417_00240at 46.658 kb on + strand, within PS417_00240at 46.658 kb on + strand, within PS417_00240at 46.658 kb on + strand, within PS417_00240at 46.658 kb on + strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240at 46.659 kb on - strand, within PS417_00240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X
remove
43,841 + +0.1
43,841 + +0.1
43,841 + -0.4
43,841 + -2.0
43,841 + -0.6
43,842 - -0.4
43,845 + +0.2
43,846 - -1.4
43,852 + -0.3
43,885 + +0.1
43,885 + -0.5
43,885 + -0.6
43,885 + -0.2
43,886 - +0.2
43,886 - -0.1
43,887 + +1.0
43,892 + -1.1
43,893 - -0.1
43,893 - +0.7
43,902 - +0.9
43,977 + PS417_00220 0.14 +0.0
44,070 - PS417_00220 0.53 -1.3
44,246 - PS417_00225 0.15 +0.2
44,283 + PS417_00225 0.24 -1.5
44,283 + PS417_00225 0.24 +0.9
44,284 - PS417_00225 0.24 -0.3
44,337 + PS417_00225 0.36 +0.1
44,338 - PS417_00225 0.37 +0.8
44,631 - +0.1
44,631 - +0.1
44,631 - -0.6
44,631 - +1.7
44,664 - +0.3
44,669 + -1.1
44,669 + -0.7
44,670 - +1.4
44,670 - -0.2
44,670 - +0.2
44,670 - +0.1
44,671 + +0.2
44,671 + -0.2
44,671 + +0.2
44,672 - +0.8
44,672 - +0.1
44,672 - +0.3
44,672 - -0.1
44,672 - -0.2
44,811 + +0.5
44,812 - -1.7
44,812 - +0.9
44,991 + PS417_00230 0.23 -1.2
45,013 - PS417_00230 0.25 -1.0
45,108 + PS417_00230 0.34 -0.6
45,109 - PS417_00230 0.35 -0.3
45,109 - PS417_00230 0.35 -0.1
45,173 - PS417_00230 0.41 -0.5
45,189 + PS417_00230 0.42 -1.8
45,190 - PS417_00230 0.42 +0.1
45,297 + PS417_00230 0.53 +0.3
45,297 + PS417_00230 0.53 -0.1
45,298 - PS417_00230 0.53 -0.2
45,298 - PS417_00230 0.53 -0.7
45,395 + PS417_00230 0.62 -0.4
45,395 + PS417_00230 0.62 -1.8
45,586 - PS417_00230 0.80 -0.2
45,642 + PS417_00230 0.86 -1.6
45,642 + PS417_00230 0.86 -2.4
45,643 - PS417_00230 0.86 +0.7
45,643 - PS417_00230 0.86 -1.0
45,875 - +0.2
45,892 + -0.8
46,137 + PS417_00235 0.39 +0.3
46,137 + PS417_00235 0.39 +0.0
46,218 + PS417_00235 0.52 -0.2
46,218 + PS417_00235 0.52 -0.1
46,218 + PS417_00235 0.52 -0.2
46,219 - PS417_00235 0.52 +0.1
46,288 - PS417_00235 0.62 -0.8
46,360 - PS417_00235 0.73 -0.0
46,468 + PS417_00235 0.89 -1.2
46,580 + -0.2
46,595 + PS417_00240 0.11 -0.3
46,654 + PS417_00240 0.22 +1.9
46,654 + PS417_00240 0.22 -0.0
46,654 + PS417_00240 0.22 -0.5
46,654 + PS417_00240 0.22 +0.3
46,654 + PS417_00240 0.22 +0.7
46,655 - PS417_00240 0.22 +0.1
46,655 - PS417_00240 0.22 +0.2
46,658 + PS417_00240 0.23 +0.5
46,658 + PS417_00240 0.23 -0.1
46,658 + PS417_00240 0.23 -1.9
46,658 + PS417_00240 0.23 +0.0
46,658 + PS417_00240 0.23 +0.1
46,658 + PS417_00240 0.23 +0.5
46,659 - PS417_00240 0.23 +0.4
46,659 - PS417_00240 0.23 +1.2
46,659 - PS417_00240 0.23 -0.1
46,659 - PS417_00240 0.23 -0.4
46,659 - PS417_00240 0.23 +0.7
46,659 - PS417_00240 0.23 -1.1
46,659 - PS417_00240 0.23 -0.0
46,659 - PS417_00240 0.23 +0.7
46,659 - PS417_00240 0.23 +0.6
46,659 - PS417_00240 0.23 +0.7
46,659 - PS417_00240 0.23 -0.6

Or see this region's nucleotide sequence