Strain Fitness in Pseudomonas putida KT2440 around PP_5029

Experiment: Growth at 25C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_5028 and PP_5029 are separated by 58 nucleotidesPP_5029 and PP_5030 are separated by 10 nucleotides PP_5028: PP_5028 - proline iminopeptidase, at 5,729,395 to 5,730,477 _5028 PP_5029: PP_5029 - N-formylglutamate deformylase, at 5,730,536 to 5,731,339 _5029 PP_5030: PP_5030 - Imidazolonepropionase, at 5,731,350 to 5,732,555 _5030 Position (kb) 5730 5731 5732Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5729.576 kb on + strand, within PP_5028at 5729.669 kb on + strand, within PP_5028at 5729.882 kb on + strand, within PP_5028at 5729.882 kb on + strand, within PP_5028at 5729.882 kb on + strand, within PP_5028at 5729.882 kb on + strand, within PP_5028at 5729.882 kb on + strand, within PP_5028at 5729.883 kb on - strand, within PP_5028at 5729.894 kb on + strand, within PP_5028at 5729.894 kb on + strand, within PP_5028at 5729.927 kb on + strand, within PP_5028at 5730.064 kb on + strand, within PP_5028at 5730.064 kb on + strand, within PP_5028at 5730.185 kb on + strand, within PP_5028at 5730.203 kb on + strand, within PP_5028at 5730.203 kb on + strand, within PP_5028at 5730.293 kb on + strand, within PP_5028at 5730.293 kb on + strand, within PP_5028at 5730.294 kb on - strand, within PP_5028at 5730.294 kb on - strand, within PP_5028at 5730.387 kb on + strandat 5730.387 kb on + strandat 5730.387 kb on + strandat 5730.408 kb on - strandat 5730.546 kb on + strandat 5730.546 kb on + strandat 5730.547 kb on - strandat 5730.547 kb on - strandat 5730.581 kb on + strandat 5730.581 kb on + strandat 5730.582 kb on - strandat 5730.593 kb on + strandat 5730.594 kb on - strandat 5730.652 kb on + strand, within PP_5029at 5730.652 kb on + strand, within PP_5029at 5730.652 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.654 kb on + strand, within PP_5029at 5730.655 kb on - strand, within PP_5029at 5730.655 kb on - strand, within PP_5029at 5730.655 kb on - strand, within PP_5029at 5730.655 kb on - strand, within PP_5029at 5730.655 kb on - strand, within PP_5029at 5730.655 kb on - strand, within PP_5029at 5730.691 kb on + strand, within PP_5029at 5730.691 kb on + strand, within PP_5029at 5730.691 kb on + strand, within PP_5029at 5730.692 kb on - strand, within PP_5029at 5730.712 kb on - strand, within PP_5029at 5730.748 kb on + strand, within PP_5029at 5730.748 kb on + strand, within PP_5029at 5730.749 kb on - strand, within PP_5029at 5730.762 kb on + strand, within PP_5029at 5730.762 kb on + strand, within PP_5029at 5730.835 kb on + strand, within PP_5029at 5730.835 kb on + strand, within PP_5029at 5730.918 kb on + strand, within PP_5029at 5730.919 kb on - strand, within PP_5029at 5730.958 kb on + strand, within PP_5029at 5730.958 kb on + strand, within PP_5029at 5730.958 kb on + strand, within PP_5029at 5730.959 kb on - strand, within PP_5029at 5730.969 kb on + strand, within PP_5029at 5730.969 kb on + strand, within PP_5029at 5730.994 kb on - strand, within PP_5029at 5731.092 kb on + strand, within PP_5029at 5731.093 kb on - strand, within PP_5029at 5731.143 kb on + strand, within PP_5029at 5731.144 kb on - strand, within PP_5029at 5731.188 kb on + strand, within PP_5029at 5731.188 kb on + strand, within PP_5029at 5731.189 kb on - strand, within PP_5029at 5731.328 kb on + strandat 5731.328 kb on + strandat 5731.329 kb on - strandat 5731.329 kb on - strandat 5731.329 kb on - strandat 5731.329 kb on - strandat 5731.380 kb on + strandat 5731.411 kb on + strandat 5731.412 kb on - strandat 5731.700 kb on - strand, within PP_5030at 5732.005 kb on + strand, within PP_5030at 5732.006 kb on - strand, within PP_5030at 5732.184 kb on + strand, within PP_5030at 5732.185 kb on - strand, within PP_5030at 5732.185 kb on - strand, within PP_5030at 5732.243 kb on + strand, within PP_5030at 5732.293 kb on + strand, within PP_5030at 5732.293 kb on + strand, within PP_5030at 5732.293 kb on + strand, within PP_5030at 5732.294 kb on - strand, within PP_5030at 5732.294 kb on - strand, within PP_5030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C
remove
5,729,576 + PP_5028 0.17 +3.9
5,729,669 + PP_5028 0.25 -1.1
5,729,882 + PP_5028 0.45 -1.5
5,729,882 + PP_5028 0.45 +0.1
5,729,882 + PP_5028 0.45 -1.4
5,729,882 + PP_5028 0.45 -0.2
5,729,882 + PP_5028 0.45 -1.6
5,729,883 - PP_5028 0.45 -0.2
5,729,894 + PP_5028 0.46 -1.1
5,729,894 + PP_5028 0.46 -2.1
5,729,927 + PP_5028 0.49 -1.8
5,730,064 + PP_5028 0.62 -0.9
5,730,064 + PP_5028 0.62 -1.6
5,730,185 + PP_5028 0.73 -1.6
5,730,203 + PP_5028 0.75 -0.5
5,730,203 + PP_5028 0.75 -0.9
5,730,293 + PP_5028 0.83 -2.2
5,730,293 + PP_5028 0.83 -1.5
5,730,294 - PP_5028 0.83 +0.1
5,730,294 - PP_5028 0.83 +0.8
5,730,387 + -2.0
5,730,387 + -0.2
5,730,387 + -1.2
5,730,408 - +0.1
5,730,546 + -4.4
5,730,546 + +0.5
5,730,547 - -1.5
5,730,547 - -2.9
5,730,581 + +0.1
5,730,581 + +0.1
5,730,582 - -4.0
5,730,593 + +0.9
5,730,594 - +0.5
5,730,652 + PP_5029 0.14 -1.5
5,730,652 + PP_5029 0.14 -1.7
5,730,652 + PP_5029 0.14 -0.4
5,730,654 + PP_5029 0.15 -3.2
5,730,654 + PP_5029 0.15 +1.6
5,730,654 + PP_5029 0.15 -2.9
5,730,654 + PP_5029 0.15 +0.9
5,730,654 + PP_5029 0.15 -2.4
5,730,654 + PP_5029 0.15 -0.3
5,730,654 + PP_5029 0.15 +1.0
5,730,654 + PP_5029 0.15 -0.5
5,730,654 + PP_5029 0.15 +0.2
5,730,655 - PP_5029 0.15 -0.6
5,730,655 - PP_5029 0.15 -3.9
5,730,655 - PP_5029 0.15 -3.4
5,730,655 - PP_5029 0.15 +0.7
5,730,655 - PP_5029 0.15 -2.6
5,730,655 - PP_5029 0.15 -3.3
5,730,691 + PP_5029 0.19 +0.1
5,730,691 + PP_5029 0.19 +0.0
5,730,691 + PP_5029 0.19 +0.6
5,730,692 - PP_5029 0.19 +1.2
5,730,712 - PP_5029 0.22 -3.4
5,730,748 + PP_5029 0.26 -4.1
5,730,748 + PP_5029 0.26 -3.1
5,730,749 - PP_5029 0.26 -2.8
5,730,762 + PP_5029 0.28 -0.9
5,730,762 + PP_5029 0.28 -0.9
5,730,835 + PP_5029 0.37 +0.4
5,730,835 + PP_5029 0.37 +0.4
5,730,918 + PP_5029 0.48 -0.0
5,730,919 - PP_5029 0.48 -0.7
5,730,958 + PP_5029 0.52 +0.4
5,730,958 + PP_5029 0.52 -3.6
5,730,958 + PP_5029 0.52 -3.9
5,730,959 - PP_5029 0.53 -3.3
5,730,969 + PP_5029 0.54 +1.3
5,730,969 + PP_5029 0.54 -1.4
5,730,994 - PP_5029 0.57 +0.6
5,731,092 + PP_5029 0.69 +0.8
5,731,093 - PP_5029 0.69 -2.5
5,731,143 + PP_5029 0.75 -0.9
5,731,144 - PP_5029 0.76 -1.6
5,731,188 + PP_5029 0.81 -3.9
5,731,188 + PP_5029 0.81 +1.1
5,731,189 - PP_5029 0.81 +1.2
5,731,328 + +0.4
5,731,328 + -0.1
5,731,329 - -2.0
5,731,329 - +1.4
5,731,329 - -2.3
5,731,329 - +0.7
5,731,380 + +0.7
5,731,411 + +0.2
5,731,412 - +0.2
5,731,700 - PP_5030 0.29 -0.3
5,732,005 + PP_5030 0.54 +0.3
5,732,006 - PP_5030 0.54 -2.5
5,732,184 + PP_5030 0.69 +1.5
5,732,185 - PP_5030 0.69 -0.8
5,732,185 - PP_5030 0.69 +0.9
5,732,243 + PP_5030 0.74 -1.8
5,732,293 + PP_5030 0.78 +2.0
5,732,293 + PP_5030 0.78 +0.2
5,732,293 + PP_5030 0.78 -3.7
5,732,294 - PP_5030 0.78 +1.0
5,732,294 - PP_5030 0.78 +0.6

Or see this region's nucleotide sequence