Experiment: Growth at 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4834 and PP_4835 are separated by 218 nucleotides PP_4835 and PP_4836 are separated by 47 nucleotides PP_4836 and PP_4837 are separated by 22 nucleotides
PP_4834: PP_4834 - SPFH domain/Band 7 family protein, at 5,500,535 to 5,501,389
_4834
PP_4835: PP_4835 - conserved exported protein of unknown function, at 5,501,608 to 5,501,997
_4835
PP_4836: PP_4836 - conserved exported protein of unknown function, at 5,502,045 to 5,502,530
_4836
PP_4837: PP_4837 - conserved protein of unknown function, at 5,502,553 to 5,502,984
_4837
Position (kb) 5501
5502 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5500.691 kb on + strand, within PP_4834 at 5500.691 kb on + strand, within PP_4834 at 5500.691 kb on + strand, within PP_4834 at 5500.812 kb on + strand, within PP_4834 at 5500.813 kb on - strand, within PP_4834 at 5500.813 kb on - strand, within PP_4834 at 5500.813 kb on - strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.836 kb on - strand, within PP_4834 at 5500.836 kb on - strand, within PP_4834 at 5500.836 kb on - strand, within PP_4834 at 5500.836 kb on - strand, within PP_4834 at 5501.261 kb on + strand, within PP_4834 at 5501.261 kb on + strand, within PP_4834 at 5501.261 kb on + strand, within PP_4834 at 5501.261 kb on + strand, within PP_4834 at 5501.262 kb on - strand, within PP_4834 at 5501.262 kb on - strand, within PP_4834 at 5501.262 kb on - strand, within PP_4834 at 5501.262 kb on - strand, within PP_4834 at 5501.265 kb on + strand, within PP_4834 at 5501.265 kb on + strand, within PP_4834 at 5501.279 kb on + strand, within PP_4834 at 5501.279 kb on + strand, within PP_4834 at 5501.280 kb on - strand, within PP_4834 at 5501.280 kb on - strand, within PP_4834 at 5501.280 kb on - strand, within PP_4834 at 5501.280 kb on - strand, within PP_4834 at 5501.448 kb on + strand at 5501.515 kb on + strand at 5501.556 kb on + strand at 5501.560 kb on + strand at 5501.560 kb on + strand at 5501.560 kb on + strand at 5501.560 kb on + strand at 5501.561 kb on - strand at 5501.561 kb on - strand at 5501.563 kb on - strand at 5501.563 kb on - strand at 5501.572 kb on + strand at 5501.573 kb on - strand at 5501.578 kb on - strand at 5501.578 kb on - strand at 5501.578 kb on - strand at 5501.935 kb on + strand, within PP_4835 at 5501.936 kb on - strand, within PP_4835 at 5501.936 kb on - strand, within PP_4835 at 5501.969 kb on + strand at 5501.991 kb on - strand at 5502.111 kb on + strand, within PP_4836 at 5502.112 kb on - strand, within PP_4836 at 5502.186 kb on + strand, within PP_4836 at 5502.193 kb on - strand, within PP_4836 at 5502.366 kb on + strand, within PP_4836 at 5502.367 kb on - strand, within PP_4836 at 5502.478 kb on + strand, within PP_4836 at 5502.531 kb on + strand at 5502.531 kb on + strand at 5502.532 kb on - strand at 5502.583 kb on - strand at 5502.665 kb on + strand, within PP_4837 at 5502.935 kb on + strand, within PP_4837 at 5502.935 kb on + strand, within PP_4837 at 5502.936 kb on - strand, within PP_4837 at 5502.936 kb on - strand, within PP_4837
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 25C remove 5,500,691 + PP_4834 0.18 -3.5 5,500,691 + PP_4834 0.18 +0.5 5,500,691 + PP_4834 0.18 -2.9 5,500,812 + PP_4834 0.32 +1.5 5,500,813 - PP_4834 0.33 -0.7 5,500,813 - PP_4834 0.33 -0.6 5,500,813 - PP_4834 0.33 +1.0 5,500,835 + PP_4834 0.35 +3.1 5,500,835 + PP_4834 0.35 +1.5 5,500,835 + PP_4834 0.35 +0.9 5,500,835 + PP_4834 0.35 +0.5 5,500,835 + PP_4834 0.35 +0.2 5,500,835 + PP_4834 0.35 -0.3 5,500,835 + PP_4834 0.35 +0.5 5,500,836 - PP_4834 0.35 -0.5 5,500,836 - PP_4834 0.35 +0.7 5,500,836 - PP_4834 0.35 +1.9 5,500,836 - PP_4834 0.35 +0.7 5,501,261 + PP_4834 0.85 -0.3 5,501,261 + PP_4834 0.85 +2.0 5,501,261 + PP_4834 0.85 +1.3 5,501,261 + PP_4834 0.85 +2.3 5,501,262 - PP_4834 0.85 -2.9 5,501,262 - PP_4834 0.85 -0.2 5,501,262 - PP_4834 0.85 +0.9 5,501,262 - PP_4834 0.85 -3.3 5,501,265 + PP_4834 0.85 -0.8 5,501,265 + PP_4834 0.85 +0.7 5,501,279 + PP_4834 0.87 +1.2 5,501,279 + PP_4834 0.87 +0.9 5,501,280 - PP_4834 0.87 -0.4 5,501,280 - PP_4834 0.87 +1.4 5,501,280 - PP_4834 0.87 -2.7 5,501,280 - PP_4834 0.87 +0.3 5,501,448 + +0.0 5,501,515 + -4.6 5,501,556 + +0.2 5,501,560 + -1.1 5,501,560 + +2.5 5,501,560 + +0.6 5,501,560 + -1.6 5,501,561 - +0.0 5,501,561 - -3.3 5,501,563 - -3.7 5,501,563 - +1.6 5,501,572 + +1.9 5,501,573 - +1.2 5,501,578 - +0.0 5,501,578 - -3.2 5,501,578 - -3.8 5,501,935 + PP_4835 0.84 -1.6 5,501,936 - PP_4835 0.84 -3.1 5,501,936 - PP_4835 0.84 -0.3 5,501,969 + +1.5 5,501,991 - +0.2 5,502,111 + PP_4836 0.14 -3.9 5,502,112 - PP_4836 0.14 -0.6 5,502,186 + PP_4836 0.29 -3.7 5,502,193 - PP_4836 0.30 +0.8 5,502,366 + PP_4836 0.66 +1.4 5,502,367 - PP_4836 0.66 +0.1 5,502,478 + PP_4836 0.89 +0.9 5,502,531 + +0.6 5,502,531 + +1.2 5,502,532 - -1.0 5,502,583 - -0.0 5,502,665 + PP_4837 0.26 -3.8 5,502,935 + PP_4837 0.88 +0.3 5,502,935 + PP_4837 0.88 -3.0 5,502,936 - PP_4837 0.89 +0.6 5,502,936 - PP_4837 0.89 +0.3
Or see this region's nucleotide sequence