Strain Fitness in Pseudomonas putida KT2440 around PP_2831

Experiment: Growth at 25C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2830 and PP_2831 are separated by 15 nucleotidesPP_2831 and PP_2832 are separated by 179 nucleotides PP_2830: PP_2830 - Major facilitator family transporter, at 3,230,030 to 3,231,382 _2830 PP_2831: PP_2831 - L-fuconate dehydratase, at 3,231,398 to 3,232,633 _2831 PP_2832: PP_2832 - galactose-binding protein regulator, at 3,232,813 to 3,233,760 _2832 Position (kb) 3231 3232 3233Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3230.493 kb on + strand, within PP_2830at 3230.493 kb on + strand, within PP_2830at 3230.494 kb on - strand, within PP_2830at 3230.494 kb on - strand, within PP_2830at 3230.503 kb on + strand, within PP_2830at 3230.532 kb on + strand, within PP_2830at 3230.532 kb on + strand, within PP_2830at 3230.532 kb on + strand, within PP_2830at 3230.533 kb on - strand, within PP_2830at 3230.727 kb on + strand, within PP_2830at 3230.727 kb on + strand, within PP_2830at 3230.728 kb on - strand, within PP_2830at 3230.728 kb on - strand, within PP_2830at 3230.739 kb on - strand, within PP_2830at 3230.868 kb on + strand, within PP_2830at 3230.907 kb on + strand, within PP_2830at 3230.924 kb on + strand, within PP_2830at 3230.976 kb on + strand, within PP_2830at 3230.976 kb on + strand, within PP_2830at 3230.976 kb on + strand, within PP_2830at 3230.976 kb on + strand, within PP_2830at 3230.976 kb on + strand, within PP_2830at 3231.031 kb on + strand, within PP_2830at 3231.032 kb on - strand, within PP_2830at 3231.032 kb on - strand, within PP_2830at 3231.040 kb on + strand, within PP_2830at 3231.108 kb on + strand, within PP_2830at 3231.108 kb on + strand, within PP_2830at 3231.108 kb on + strand, within PP_2830at 3231.109 kb on - strand, within PP_2830at 3231.109 kb on - strand, within PP_2830at 3231.109 kb on - strand, within PP_2830at 3231.141 kb on + strand, within PP_2830at 3231.142 kb on - strand, within PP_2830at 3231.142 kb on - strand, within PP_2830at 3231.481 kb on - strandat 3231.504 kb on + strandat 3231.604 kb on - strand, within PP_2831at 3231.631 kb on - strand, within PP_2831at 3231.631 kb on - strand, within PP_2831at 3231.678 kb on + strand, within PP_2831at 3231.679 kb on - strand, within PP_2831at 3232.120 kb on - strand, within PP_2831at 3232.120 kb on - strand, within PP_2831at 3232.254 kb on + strand, within PP_2831at 3232.254 kb on + strand, within PP_2831at 3232.481 kb on - strandat 3232.602 kb on + strandat 3232.615 kb on - strandat 3232.674 kb on - strandat 3232.696 kb on + strandat 3232.703 kb on + strandat 3232.704 kb on - strandat 3232.704 kb on - strandat 3232.753 kb on + strandat 3232.753 kb on + strandat 3232.753 kb on + strandat 3232.753 kb on + strandat 3232.753 kb on + strandat 3232.753 kb on + strandat 3232.753 kb on + strandat 3232.754 kb on - strandat 3232.754 kb on - strandat 3232.754 kb on - strandat 3232.754 kb on - strandat 3232.754 kb on - strandat 3232.754 kb on - strandat 3232.776 kb on + strandat 3232.810 kb on + strandat 3232.812 kb on + strandat 3232.976 kb on + strand, within PP_2832at 3232.977 kb on - strand, within PP_2832at 3233.003 kb on + strand, within PP_2832at 3233.232 kb on + strand, within PP_2832at 3233.232 kb on + strand, within PP_2832at 3233.232 kb on + strand, within PP_2832at 3233.232 kb on + strand, within PP_2832at 3233.232 kb on + strand, within PP_2832at 3233.233 kb on - strand, within PP_2832at 3233.291 kb on + strand, within PP_2832at 3233.296 kb on - strand, within PP_2832at 3233.344 kb on - strand, within PP_2832at 3233.378 kb on + strand, within PP_2832at 3233.379 kb on - strand, within PP_2832at 3233.379 kb on - strand, within PP_2832at 3233.623 kb on + strand, within PP_2832at 3233.624 kb on - strand, within PP_2832at 3233.624 kb on - strand, within PP_2832

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C
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3,230,493 + PP_2830 0.34 +0.7
3,230,493 + PP_2830 0.34 -1.5
3,230,494 - PP_2830 0.34 -2.8
3,230,494 - PP_2830 0.34 -3.1
3,230,503 + PP_2830 0.35 +1.4
3,230,532 + PP_2830 0.37 -4.0
3,230,532 + PP_2830 0.37 +0.1
3,230,532 + PP_2830 0.37 -2.4
3,230,533 - PP_2830 0.37 +0.2
3,230,727 + PP_2830 0.52 +0.2
3,230,727 + PP_2830 0.52 +1.2
3,230,728 - PP_2830 0.52 -3.6
3,230,728 - PP_2830 0.52 +0.1
3,230,739 - PP_2830 0.52 +0.5
3,230,868 + PP_2830 0.62 -2.8
3,230,907 + PP_2830 0.65 +0.8
3,230,924 + PP_2830 0.66 +0.5
3,230,976 + PP_2830 0.70 +0.8
3,230,976 + PP_2830 0.70 -0.5
3,230,976 + PP_2830 0.70 +0.8
3,230,976 + PP_2830 0.70 +1.1
3,230,976 + PP_2830 0.70 -4.6
3,231,031 + PP_2830 0.74 +0.2
3,231,032 - PP_2830 0.74 +1.0
3,231,032 - PP_2830 0.74 -2.7
3,231,040 + PP_2830 0.75 +0.4
3,231,108 + PP_2830 0.80 -0.6
3,231,108 + PP_2830 0.80 +0.3
3,231,108 + PP_2830 0.80 -0.2
3,231,109 - PP_2830 0.80 +1.7
3,231,109 - PP_2830 0.80 +1.7
3,231,109 - PP_2830 0.80 -1.0
3,231,141 + PP_2830 0.82 +1.1
3,231,142 - PP_2830 0.82 -1.0
3,231,142 - PP_2830 0.82 +1.1
3,231,481 - -1.1
3,231,504 + +1.6
3,231,604 - PP_2831 0.17 -0.2
3,231,631 - PP_2831 0.19 -0.0
3,231,631 - PP_2831 0.19 -0.9
3,231,678 + PP_2831 0.23 -1.6
3,231,679 - PP_2831 0.23 +3.4
3,232,120 - PP_2831 0.58 -0.7
3,232,120 - PP_2831 0.58 -0.0
3,232,254 + PP_2831 0.69 -2.4
3,232,254 + PP_2831 0.69 -0.5
3,232,481 - +1.2
3,232,602 + -0.7
3,232,615 - -0.4
3,232,674 - -0.0
3,232,696 + -3.2
3,232,703 + -1.0
3,232,704 - +0.4
3,232,704 - -1.2
3,232,753 + -0.0
3,232,753 + +0.5
3,232,753 + +1.1
3,232,753 + +0.9
3,232,753 + -3.4
3,232,753 + -0.4
3,232,753 + +1.0
3,232,754 - +0.5
3,232,754 - -0.5
3,232,754 - -3.9
3,232,754 - -0.1
3,232,754 - -0.2
3,232,754 - +0.9
3,232,776 + +1.1
3,232,810 + -1.0
3,232,812 + -3.1
3,232,976 + PP_2832 0.17 +1.2
3,232,977 - PP_2832 0.17 +2.6
3,233,003 + PP_2832 0.20 +0.3
3,233,232 + PP_2832 0.44 -4.1
3,233,232 + PP_2832 0.44 -4.2
3,233,232 + PP_2832 0.44 +1.0
3,233,232 + PP_2832 0.44 +1.2
3,233,232 + PP_2832 0.44 -2.9
3,233,233 - PP_2832 0.44 -0.4
3,233,291 + PP_2832 0.50 +0.3
3,233,296 - PP_2832 0.51 -0.2
3,233,344 - PP_2832 0.56 +0.0
3,233,378 + PP_2832 0.60 +0.1
3,233,379 - PP_2832 0.60 +1.1
3,233,379 - PP_2832 0.60 -1.2
3,233,623 + PP_2832 0.85 -0.0
3,233,624 - PP_2832 0.86 -0.6
3,233,624 - PP_2832 0.86 +1.3

Or see this region's nucleotide sequence