Strain Fitness in Pseudomonas putida KT2440 around PP_2823

Experiment: Growth at 25C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5539 and PP_2823 are separated by 29 nucleotidesPP_2823 and PP_2824 are separated by 559 nucleotides PP_5539: PP_5539 - conserved exported protein of unknown function, at 3,219,851 to 3,221,011 _5539 PP_2823: PP_2823 - Methyl-accepting chemotaxis transducer, at 3,221,041 to 3,222,693 _2823 PP_2824: PP_2824 - Transcriptional regulator, TetR family, at 3,223,253 to 3,223,933 _2824 Position (kb) 3221 3222 3223Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3220.053 kb on + strand, within PP_5539at 3220.053 kb on + strand, within PP_5539at 3220.065 kb on + strand, within PP_5539at 3220.110 kb on + strand, within PP_5539at 3220.110 kb on + strand, within PP_5539at 3220.111 kb on - strand, within PP_5539at 3220.114 kb on + strand, within PP_5539at 3220.115 kb on - strand, within PP_5539at 3220.115 kb on - strand, within PP_5539at 3220.158 kb on + strand, within PP_5539at 3220.159 kb on - strand, within PP_5539at 3220.159 kb on - strand, within PP_5539at 3220.159 kb on - strand, within PP_5539at 3220.243 kb on - strand, within PP_5539at 3220.395 kb on + strand, within PP_5539at 3220.446 kb on + strand, within PP_5539at 3220.536 kb on + strand, within PP_5539at 3220.536 kb on + strand, within PP_5539at 3220.536 kb on + strand, within PP_5539at 3220.557 kb on + strand, within PP_5539at 3220.558 kb on - strand, within PP_5539at 3220.581 kb on + strand, within PP_5539at 3220.641 kb on + strand, within PP_5539at 3220.641 kb on + strand, within PP_5539at 3220.647 kb on + strand, within PP_5539at 3220.648 kb on - strand, within PP_5539at 3220.648 kb on - strand, within PP_5539at 3220.648 kb on - strand, within PP_5539at 3220.648 kb on - strand, within PP_5539at 3220.710 kb on + strand, within PP_5539at 3220.710 kb on + strand, within PP_5539at 3220.710 kb on + strand, within PP_5539at 3220.711 kb on - strand, within PP_5539at 3221.230 kb on + strand, within PP_2823at 3221.652 kb on + strand, within PP_2823at 3221.736 kb on + strand, within PP_2823at 3221.736 kb on + strand, within PP_2823at 3221.736 kb on + strand, within PP_2823at 3221.737 kb on - strand, within PP_2823at 3221.737 kb on - strand, within PP_2823at 3221.737 kb on - strandat 3221.752 kb on + strand, within PP_2823at 3221.753 kb on - strand, within PP_2823at 3221.753 kb on - strand, within PP_2823at 3222.095 kb on + strand, within PP_2823at 3222.161 kb on + strand, within PP_2823at 3222.239 kb on - strand, within PP_2823at 3222.579 kb on - strandat 3222.785 kb on + strandat 3222.786 kb on - strandat 3222.797 kb on - strandat 3222.987 kb on - strandat 3223.024 kb on - strandat 3223.066 kb on + strandat 3223.067 kb on - strandat 3223.067 kb on - strandat 3223.067 kb on - strandat 3223.067 kb on - strandat 3223.254 kb on + strandat 3223.482 kb on + strand, within PP_2824at 3223.600 kb on + strand, within PP_2824at 3223.601 kb on - strand, within PP_2824

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C
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3,220,053 + PP_5539 0.17 +0.4
3,220,053 + PP_5539 0.17 -1.1
3,220,065 + PP_5539 0.18 +1.3
3,220,110 + PP_5539 0.22 -0.7
3,220,110 + PP_5539 0.22 +0.6
3,220,111 - PP_5539 0.22 +1.1
3,220,114 + PP_5539 0.23 +2.0
3,220,115 - PP_5539 0.23 +1.8
3,220,115 - PP_5539 0.23 +1.0
3,220,158 + PP_5539 0.26 -1.3
3,220,159 - PP_5539 0.27 +0.9
3,220,159 - PP_5539 0.27 -3.3
3,220,159 - PP_5539 0.27 -1.8
3,220,243 - PP_5539 0.34 -1.7
3,220,395 + PP_5539 0.47 -1.9
3,220,446 + PP_5539 0.51 +1.6
3,220,536 + PP_5539 0.59 -0.7
3,220,536 + PP_5539 0.59 -1.6
3,220,536 + PP_5539 0.59 -0.7
3,220,557 + PP_5539 0.61 +0.6
3,220,558 - PP_5539 0.61 -1.3
3,220,581 + PP_5539 0.63 +0.2
3,220,641 + PP_5539 0.68 -2.1
3,220,641 + PP_5539 0.68 -0.4
3,220,647 + PP_5539 0.69 -1.2
3,220,648 - PP_5539 0.69 -0.6
3,220,648 - PP_5539 0.69 +1.8
3,220,648 - PP_5539 0.69 -4.5
3,220,648 - PP_5539 0.69 -0.7
3,220,710 + PP_5539 0.74 +0.4
3,220,710 + PP_5539 0.74 -3.7
3,220,710 + PP_5539 0.74 -4.4
3,220,711 - PP_5539 0.74 +1.6
3,221,230 + PP_2823 0.11 +0.1
3,221,652 + PP_2823 0.37 +0.6
3,221,736 + PP_2823 0.42 +0.4
3,221,736 + PP_2823 0.42 -3.4
3,221,736 + PP_2823 0.42 -0.6
3,221,737 - PP_2823 0.42 +1.2
3,221,737 - PP_2823 0.42 -3.1
3,221,737 - -1.8
3,221,752 + PP_2823 0.43 +0.2
3,221,753 - PP_2823 0.43 +2.0
3,221,753 - PP_2823 0.43 +0.5
3,222,095 + PP_2823 0.64 -1.1
3,222,161 + PP_2823 0.68 +2.2
3,222,239 - PP_2823 0.72 +1.7
3,222,579 - -3.7
3,222,785 + +0.4
3,222,786 - +1.0
3,222,797 - +0.8
3,222,987 - -1.2
3,223,024 - -0.8
3,223,066 + +0.3
3,223,067 - -2.3
3,223,067 - -2.7
3,223,067 - -1.3
3,223,067 - -3.2
3,223,254 + -4.2
3,223,482 + PP_2824 0.34 +1.6
3,223,600 + PP_2824 0.51 -1.7
3,223,601 - PP_2824 0.51 -1.7

Or see this region's nucleotide sequence