Experiment: Growth at 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1273 and PP_1274 are separated by 248 nucleotides PP_1274 and PP_1275 are separated by 31 nucleotides PP_1275 and PP_1276 are separated by 163 nucleotides
PP_1273: PP_1273 - putative Multidrug efflux MFS outer membrane protein, at 1,454,467 to 1,455,921
_1273
PP_1274: PP_1274 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 1,456,170 to 1,456,982
_1274
PP_1275: PP_1275 - conserved protein of unknown function, at 1,457,014 to 1,457,478
_1275
PP_1276: PP_1276 - conserved protein of unknown function, at 1,457,642 to 1,458,100
_1276
Position (kb) 1456
1457 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1455.605 kb on - strand, within PP_1273 at 1455.605 kb on - strand, within PP_1273 at 1455.650 kb on + strand, within PP_1273 at 1455.651 kb on - strand, within PP_1273 at 1455.658 kb on + strand, within PP_1273 at 1455.658 kb on + strand, within PP_1273 at 1455.658 kb on + strand, within PP_1273 at 1455.658 kb on + strand, within PP_1273 at 1455.659 kb on - strand, within PP_1273 at 1455.659 kb on - strand, within PP_1273 at 1455.659 kb on - strand, within PP_1273 at 1455.742 kb on + strand, within PP_1273 at 1455.859 kb on + strand at 1455.859 kb on + strand at 1455.859 kb on + strand at 1455.860 kb on - strand at 1455.860 kb on - strand at 1455.935 kb on + strand at 1455.976 kb on + strand at 1455.976 kb on + strand at 1455.976 kb on + strand at 1456.066 kb on - strand at 1456.087 kb on + strand at 1456.154 kb on - strand at 1456.259 kb on + strand, within PP_1274 at 1456.278 kb on + strand, within PP_1274 at 1456.279 kb on - strand, within PP_1274 at 1456.333 kb on - strand, within PP_1274 at 1456.492 kb on - strand, within PP_1274 at 1456.593 kb on + strand, within PP_1274 at 1456.593 kb on + strand, within PP_1274 at 1456.602 kb on + strand, within PP_1274 at 1456.602 kb on + strand, within PP_1274 at 1456.642 kb on - strand, within PP_1274 at 1456.642 kb on - strand, within PP_1274 at 1456.824 kb on + strand, within PP_1274 at 1456.825 kb on - strand, within PP_1274 at 1457.029 kb on - strand at 1457.029 kb on - strand at 1457.162 kb on + strand, within PP_1275 at 1457.162 kb on + strand, within PP_1275 at 1457.162 kb on + strand, within PP_1275 at 1457.163 kb on - strand, within PP_1275 at 1457.202 kb on - strand, within PP_1275 at 1457.260 kb on + strand, within PP_1275 at 1457.300 kb on + strand, within PP_1275 at 1457.300 kb on + strand, within PP_1275 at 1457.300 kb on + strand, within PP_1275 at 1457.301 kb on - strand, within PP_1275 at 1457.512 kb on + strand at 1457.575 kb on - strand at 1457.575 kb on - strand at 1457.601 kb on + strand at 1457.805 kb on - strand, within PP_1276 at 1457.810 kb on + strand, within PP_1276 at 1457.810 kb on + strand, within PP_1276 at 1457.811 kb on - strand, within PP_1276 at 1457.811 kb on - strand, within PP_1276 at 1457.811 kb on - strand, within PP_1276 at 1457.811 kb on - strand, within PP_1276 at 1457.840 kb on + strand at 1457.936 kb on + strand, within PP_1276 at 1457.937 kb on - strand, within PP_1276 at 1457.937 kb on - strand, within PP_1276
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 25C remove 1,455,605 - PP_1273 0.78 +0.2 1,455,605 - PP_1273 0.78 +0.8 1,455,650 + PP_1273 0.81 +1.4 1,455,651 - PP_1273 0.81 +1.3 1,455,658 + PP_1273 0.82 +1.1 1,455,658 + PP_1273 0.82 +1.0 1,455,658 + PP_1273 0.82 -0.2 1,455,658 + PP_1273 0.82 -1.3 1,455,659 - PP_1273 0.82 +0.6 1,455,659 - PP_1273 0.82 -4.6 1,455,659 - PP_1273 0.82 +1.0 1,455,742 + PP_1273 0.88 +0.7 1,455,859 + +1.5 1,455,859 + +3.0 1,455,859 + +0.6 1,455,860 - -0.1 1,455,860 - -1.1 1,455,935 + -0.5 1,455,976 + +0.6 1,455,976 + +0.7 1,455,976 + -4.6 1,456,066 - +0.7 1,456,087 + +1.3 1,456,154 - +0.4 1,456,259 + PP_1274 0.11 +0.5 1,456,278 + PP_1274 0.13 -0.6 1,456,279 - PP_1274 0.13 +1.2 1,456,333 - PP_1274 0.20 +0.1 1,456,492 - PP_1274 0.40 -0.8 1,456,593 + PP_1274 0.52 -0.1 1,456,593 + PP_1274 0.52 +1.6 1,456,602 + PP_1274 0.53 +1.3 1,456,602 + PP_1274 0.53 +1.8 1,456,642 - PP_1274 0.58 -4.1 1,456,642 - PP_1274 0.58 -3.1 1,456,824 + PP_1274 0.80 -2.4 1,456,825 - PP_1274 0.81 +1.4 1,457,029 - +1.4 1,457,029 - +0.9 1,457,162 + PP_1275 0.32 +1.8 1,457,162 + PP_1275 0.32 +0.3 1,457,162 + PP_1275 0.32 +1.2 1,457,163 - PP_1275 0.32 +1.3 1,457,202 - PP_1275 0.40 +2.6 1,457,260 + PP_1275 0.53 -0.6 1,457,300 + PP_1275 0.62 -4.1 1,457,300 + PP_1275 0.62 +0.7 1,457,300 + PP_1275 0.62 -1.1 1,457,301 - PP_1275 0.62 +0.1 1,457,512 + -2.7 1,457,575 - +3.3 1,457,575 - -3.8 1,457,601 + -3.7 1,457,805 - PP_1276 0.36 -3.5 1,457,810 + PP_1276 0.37 +1.0 1,457,810 + PP_1276 0.37 -1.0 1,457,811 - PP_1276 0.37 -3.8 1,457,811 - PP_1276 0.37 -0.0 1,457,811 - PP_1276 0.37 -0.1 1,457,811 - PP_1276 0.37 -0.3 1,457,840 + +1.7 1,457,936 + PP_1276 0.64 +0.1 1,457,937 - PP_1276 0.64 -2.5 1,457,937 - PP_1276 0.64 +0.7
Or see this region's nucleotide sequence