Strain Fitness in Pseudomonas putida KT2440 around PP_0793

Experiment: Growth at 25C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0792 and PP_0793 are separated by 284 nucleotidesPP_0793 and PP_0794 are separated by 0 nucleotidesPP_0794 and PP_0795 overlap by 4 nucleotides PP_0792: PP_0792 - catabolite repressor-activator, DNA-binding transcriptional dual regulator, at 908,213 to 909,208 _0792 PP_0793: PP_0793 - Phosphotransferase system, fructose-specific EI/HPr/EIIA components, at 909,493 to 912,345 _0793 PP_0794: PP_0794 - 1-phosphofructokinase monomer, at 912,346 to 913,293 _0794 PP_0795: PP_0795 - fructose PTS permease - IIBC component, at 913,290 to 915,032 _0795 Position (kb) 909 910 911 912 913Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 908.566 kb on - strand, within PP_0792at 908.586 kb on + strand, within PP_0792at 908.586 kb on + strand, within PP_0792at 908.587 kb on - strand, within PP_0792at 908.809 kb on - strand, within PP_0792at 908.934 kb on + strand, within PP_0792at 908.982 kb on + strand, within PP_0792at 908.983 kb on - strand, within PP_0792at 908.983 kb on - strand, within PP_0792at 909.029 kb on - strand, within PP_0792at 909.109 kb on + strandat 909.153 kb on + strandat 909.153 kb on + strandat 909.153 kb on + strandat 909.224 kb on - strandat 909.224 kb on - strandat 909.224 kb on - strandat 909.256 kb on + strandat 909.256 kb on + strandat 909.345 kb on + strandat 909.435 kb on - strandat 909.435 kb on - strandat 909.435 kb on - strandat 909.453 kb on + strandat 909.454 kb on - strandat 909.454 kb on - strandat 909.454 kb on - strandat 909.454 kb on - strandat 909.607 kb on + strandat 909.607 kb on + strandat 909.681 kb on + strandat 909.681 kb on + strandat 909.682 kb on - strandat 909.706 kb on + strandat 909.719 kb on + strandat 909.747 kb on - strandat 909.772 kb on + strandat 909.773 kb on - strandat 909.786 kb on + strand, within PP_0793at 909.786 kb on + strand, within PP_0793at 909.786 kb on + strand, within PP_0793at 909.787 kb on - strand, within PP_0793at 910.661 kb on + strand, within PP_0793at 910.662 kb on - strand, within PP_0793at 910.662 kb on - strand, within PP_0793at 911.122 kb on + strand, within PP_0793at 911.122 kb on + strand, within PP_0793at 911.122 kb on + strandat 911.122 kb on + strand, within PP_0793at 911.122 kb on + strand, within PP_0793at 911.122 kb on + strand, within PP_0793at 911.123 kb on - strand, within PP_0793at 911.123 kb on - strand, within PP_0793at 911.123 kb on - strand, within PP_0793at 911.123 kb on - strand, within PP_0793at 911.123 kb on - strand, within PP_0793at 911.252 kb on + strand, within PP_0793at 911.252 kb on + strand, within PP_0793at 911.282 kb on + strand, within PP_0793at 911.282 kb on + strand, within PP_0793at 911.282 kb on + strand, within PP_0793at 911.301 kb on + strand, within PP_0793at 911.302 kb on - strand, within PP_0793at 911.487 kb on + strand, within PP_0793at 911.686 kb on + strand, within PP_0793at 911.687 kb on - strand, within PP_0793at 911.687 kb on - strand, within PP_0793at 911.817 kb on + strand, within PP_0793at 911.817 kb on + strand, within PP_0793at 911.922 kb on + strand, within PP_0793at 912.013 kb on + strand, within PP_0793at 912.014 kb on - strand, within PP_0793at 912.081 kb on - strandat 912.387 kb on + strandat 912.510 kb on - strand, within PP_0794at 912.621 kb on + strand, within PP_0794at 912.622 kb on - strand, within PP_0794at 912.622 kb on - strand, within PP_0794at 912.833 kb on + strand, within PP_0794at 912.833 kb on + strand, within PP_0794at 912.834 kb on - strand, within PP_0794at 912.904 kb on - strand, within PP_0794at 913.304 kb on - strandat 913.304 kb on - strandat 913.339 kb on + strandat 913.340 kb on - strandat 913.340 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C
remove
908,566 - PP_0792 0.35 +1.4
908,586 + PP_0792 0.37 +0.0
908,586 + PP_0792 0.37 -2.2
908,587 - PP_0792 0.38 -0.4
908,809 - PP_0792 0.60 -4.1
908,934 + PP_0792 0.72 +0.5
908,982 + PP_0792 0.77 +1.7
908,983 - PP_0792 0.77 -3.5
908,983 - PP_0792 0.77 +0.8
909,029 - PP_0792 0.82 +1.7
909,109 + +1.2
909,153 + -2.3
909,153 + +1.0
909,153 + +0.3
909,224 - -2.6
909,224 - +1.9
909,224 - +1.3
909,256 + +1.0
909,256 + -3.7
909,345 + +0.9
909,435 - +2.0
909,435 - +1.1
909,435 - +0.1
909,453 + +0.3
909,454 - +2.5
909,454 - -2.9
909,454 - +1.3
909,454 - -0.7
909,607 + +0.5
909,607 + -4.0
909,681 + -2.0
909,681 + -0.7
909,682 - -3.0
909,706 + +0.8
909,719 + -2.6
909,747 - -0.0
909,772 + +0.1
909,773 - -1.5
909,786 + PP_0793 0.10 +1.3
909,786 + PP_0793 0.10 -0.1
909,786 + PP_0793 0.10 -0.2
909,787 - PP_0793 0.10 +1.1
910,661 + PP_0793 0.41 +0.3
910,662 - PP_0793 0.41 -1.4
910,662 - PP_0793 0.41 +0.7
911,122 + PP_0793 0.57 -0.2
911,122 + PP_0793 0.57 -3.5
911,122 + -1.1
911,122 + PP_0793 0.57 +0.7
911,122 + PP_0793 0.57 -2.6
911,122 + PP_0793 0.57 -1.3
911,123 - PP_0793 0.57 -2.9
911,123 - PP_0793 0.57 +1.5
911,123 - PP_0793 0.57 +1.8
911,123 - PP_0793 0.57 +0.8
911,123 - PP_0793 0.57 +1.9
911,252 + PP_0793 0.62 -0.8
911,252 + PP_0793 0.62 -4.4
911,282 + PP_0793 0.63 -0.2
911,282 + PP_0793 0.63 -2.6
911,282 + PP_0793 0.63 -0.7
911,301 + PP_0793 0.63 +1.2
911,302 - PP_0793 0.63 +1.2
911,487 + PP_0793 0.70 -3.9
911,686 + PP_0793 0.77 -1.5
911,687 - PP_0793 0.77 -3.1
911,687 - PP_0793 0.77 -3.6
911,817 + PP_0793 0.81 +2.1
911,817 + PP_0793 0.81 +0.7
911,922 + PP_0793 0.85 -0.7
912,013 + PP_0793 0.88 -0.6
912,014 - PP_0793 0.88 -0.6
912,081 - +1.7
912,387 + +1.0
912,510 - PP_0794 0.17 -3.2
912,621 + PP_0794 0.29 -1.9
912,622 - PP_0794 0.29 +0.4
912,622 - PP_0794 0.29 -1.4
912,833 + PP_0794 0.51 -1.4
912,833 + PP_0794 0.51 +2.5
912,834 - PP_0794 0.51 +0.4
912,904 - PP_0794 0.59 -0.1
913,304 - +0.2
913,304 - -4.0
913,339 + +0.4
913,340 - +1.1
913,340 - +1.4

Or see this region's nucleotide sequence