Experiment: Growth at 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4790 and PP_4791 are separated by 354 nucleotides PP_4791 and PP_4792 are separated by 160 nucleotides
PP_4790: PP_4790 - Apolipoprotein N-acyltransferase, at 5,451,470 to 5,452,987
_4790
PP_4791: PP_4791 - transposase, at 5,453,342 to 5,454,670
_4791
PP_4792: PP_4792 - conserved exported protein of unknown function, at 5,454,831 to 5,455,592
_4792
Position (kb) 5453
5454
5455 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5452.969 kb on + strand at 5453.009 kb on - strand at 5453.009 kb on - strand at 5453.009 kb on - strand at 5453.009 kb on - strand at 5454.732 kb on + strand at 5454.805 kb on + strand at 5454.805 kb on + strand at 5454.806 kb on - strand at 5454.815 kb on + strand at 5454.815 kb on + strand at 5454.815 kb on + strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.816 kb on - strand at 5454.820 kb on - strand at 5454.820 kb on - strand at 5454.820 kb on - strand at 5454.835 kb on + strand at 5455.471 kb on - strand, within PP_4792 at 5455.475 kb on + strand, within PP_4792 at 5455.475 kb on + strand, within PP_4792 at 5455.623 kb on + strand at 5455.623 kb on + strand at 5455.624 kb on - strand at 5455.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at 25C remove 5,452,969 + -0.7 5,453,009 - -1.5 5,453,009 - +0.4 5,453,009 - -0.0 5,453,009 - +0.8 5,454,732 + +0.8 5,454,805 + -0.9 5,454,805 + -2.9 5,454,806 - -2.5 5,454,815 + -0.1 5,454,815 + +1.8 5,454,815 + +1.4 5,454,816 - -1.2 5,454,816 - -4.0 5,454,816 - -0.9 5,454,816 - +0.5 5,454,816 - -4.0 5,454,816 - -0.0 5,454,816 - -4.0 5,454,816 - +0.8 5,454,820 - +1.9 5,454,820 - -0.4 5,454,820 - +0.4 5,454,835 + +1.7 5,455,471 - PP_4792 0.84 +0.1 5,455,475 + PP_4792 0.85 -0.1 5,455,475 + PP_4792 0.85 -1.1 5,455,623 + -3.5 5,455,623 + -0.3 5,455,624 - +0.8 5,455,624 - +1.5
Or see this region's nucleotide sequence