Strain Fitness in Pseudomonas putida KT2440 around PP_4772

Experiment: Growth at 25C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4771 and PP_5713 are separated by 85 nucleotidesPP_5713 and PP_4772 are separated by 69 nucleotidesPP_4772 and PP_4773 are separated by 53 nucleotidesPP_4773 and PP_4774 are separated by 22 nucleotides PP_4771: PP_4771 - conserved membrane protein of unknown function, at 5,431,405 to 5,432,061 _4771 PP_5713: PP_5713 - conserved protein of unknown function, at 5,432,147 to 5,432,665 _5713 PP_4772: PP_4772 - ATP-dependent helicase HrpB, at 5,432,735 to 5,435,263 _4772 PP_4773: PP_4773 - conserved protein of unknown function, at 5,435,317 to 5,435,799 _4773 PP_4774: PP_4774 - divalent cation efflux transporter, at 5,435,822 to 5,436,694 _4774 Position (kb) 5432 5433 5434 5435 5436Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5431.792 kb on + strand, within PP_4771at 5431.889 kb on + strand, within PP_4771at 5432.130 kb on + strandat 5432.130 kb on + strandat 5432.131 kb on - strandat 5432.198 kb on + strandat 5432.198 kb on + strandat 5432.198 kb on + strandat 5432.199 kb on - strand, within PP_5713at 5432.199 kb on - strand, within PP_5713at 5432.199 kb on - strand, within PP_5713at 5432.245 kb on + strand, within PP_5713at 5432.245 kb on + strand, within PP_5713at 5432.246 kb on - strand, within PP_5713at 5432.246 kb on - strand, within PP_5713at 5432.333 kb on + strand, within PP_5713at 5432.404 kb on - strand, within PP_5713at 5432.423 kb on + strand, within PP_5713at 5432.424 kb on - strand, within PP_5713at 5432.435 kb on + strand, within PP_5713at 5432.435 kb on + strand, within PP_5713at 5432.435 kb on + strand, within PP_5713at 5432.436 kb on - strand, within PP_5713at 5432.436 kb on - strand, within PP_5713at 5432.436 kb on - strand, within PP_5713at 5432.457 kb on - strand, within PP_5713at 5432.459 kb on + strand, within PP_5713at 5432.528 kb on + strand, within PP_5713at 5432.529 kb on - strand, within PP_5713at 5432.619 kb on + strandat 5432.619 kb on + strandat 5432.619 kb on + strandat 5432.620 kb on - strandat 5432.658 kb on + strandat 5432.658 kb on + strandat 5432.658 kb on + strandat 5432.659 kb on - strandat 5432.659 kb on - strandat 5432.796 kb on + strandat 5432.796 kb on + strandat 5432.841 kb on + strandat 5432.841 kb on + strandat 5432.842 kb on - strandat 5432.842 kb on - strandat 5433.162 kb on + strand, within PP_4772at 5433.163 kb on - strand, within PP_4772at 5433.163 kb on - strand, within PP_4772at 5433.491 kb on + strand, within PP_4772at 5433.531 kb on + strand, within PP_4772at 5433.531 kb on + strand, within PP_4772at 5433.532 kb on - strand, within PP_4772at 5433.532 kb on - strand, within PP_4772at 5433.532 kb on - strand, within PP_4772at 5433.532 kb on - strand, within PP_4772at 5434.093 kb on - strand, within PP_4772at 5434.139 kb on + strand, within PP_4772at 5434.140 kb on - strand, within PP_4772at 5434.248 kb on + strand, within PP_4772at 5434.474 kb on + strand, within PP_4772at 5434.547 kb on + strand, within PP_4772at 5434.840 kb on + strand, within PP_4772at 5435.105 kb on + strandat 5435.105 kb on + strandat 5435.256 kb on + strandat 5435.289 kb on + strandat 5435.290 kb on - strandat 5435.290 kb on - strandat 5435.313 kb on + strandat 5435.313 kb on + strandat 5435.314 kb on - strandat 5435.314 kb on - strandat 5435.324 kb on + strandat 5435.324 kb on + strandat 5435.324 kb on + strandat 5435.377 kb on + strand, within PP_4773at 5435.377 kb on + strand, within PP_4773at 5435.378 kb on - strand, within PP_4773at 5435.378 kb on - strand, within PP_4773at 5435.462 kb on - strand, within PP_4773at 5435.539 kb on + strand, within PP_4773at 5435.539 kb on + strand, within PP_4773at 5435.540 kb on - strand, within PP_4773at 5435.540 kb on - strand, within PP_4773at 5435.540 kb on - strand, within PP_4773at 5435.593 kb on + strand, within PP_4773at 5435.594 kb on - strand, within PP_4773at 5435.596 kb on + strand, within PP_4773at 5435.830 kb on + strandat 5435.830 kb on + strandat 5435.831 kb on - strandat 5436.014 kb on + strand, within PP_4774at 5436.015 kb on - strand, within PP_4774at 5436.146 kb on + strand, within PP_4774at 5436.147 kb on - strand, within PP_4774at 5436.147 kb on - strand, within PP_4774at 5436.169 kb on + strand, within PP_4774at 5436.169 kb on + strand, within PP_4774at 5436.170 kb on - strand, within PP_4774at 5436.170 kb on - strand, within PP_4774at 5436.170 kb on - strand, within PP_4774at 5436.236 kb on + strand, within PP_4774at 5436.236 kb on + strand, within PP_4774at 5436.236 kb on + strand, within PP_4774at 5436.236 kb on + strand, within PP_4774at 5436.237 kb on - strand, within PP_4774at 5436.237 kb on - strand, within PP_4774

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C
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5,431,792 + PP_4771 0.59 +0.6
5,431,889 + PP_4771 0.74 +1.3
5,432,130 + +2.5
5,432,130 + -2.0
5,432,131 - +0.8
5,432,198 + -0.5
5,432,198 + -3.9
5,432,198 + +0.8
5,432,199 - PP_5713 0.10 -1.0
5,432,199 - PP_5713 0.10 -0.2
5,432,199 - PP_5713 0.10 -2.4
5,432,245 + PP_5713 0.19 +0.4
5,432,245 + PP_5713 0.19 +1.2
5,432,246 - PP_5713 0.19 -0.8
5,432,246 - PP_5713 0.19 -1.2
5,432,333 + PP_5713 0.36 +1.2
5,432,404 - PP_5713 0.50 +1.4
5,432,423 + PP_5713 0.53 +0.4
5,432,424 - PP_5713 0.53 -4.1
5,432,435 + PP_5713 0.55 +0.9
5,432,435 + PP_5713 0.55 -4.4
5,432,435 + PP_5713 0.55 +0.7
5,432,436 - PP_5713 0.56 +0.1
5,432,436 - PP_5713 0.56 +0.9
5,432,436 - PP_5713 0.56 +0.5
5,432,457 - PP_5713 0.60 +1.2
5,432,459 + PP_5713 0.60 -0.0
5,432,528 + PP_5713 0.73 +1.4
5,432,529 - PP_5713 0.74 +2.0
5,432,619 + -0.5
5,432,619 + +0.7
5,432,619 + +0.5
5,432,620 - +1.8
5,432,658 + -2.1
5,432,658 + -1.1
5,432,658 + +0.5
5,432,659 - +0.6
5,432,659 - -0.5
5,432,796 + -0.3
5,432,796 + +1.2
5,432,841 + -1.1
5,432,841 + -1.2
5,432,842 - -2.5
5,432,842 - -3.7
5,433,162 + PP_4772 0.17 -0.1
5,433,163 - PP_4772 0.17 +0.5
5,433,163 - PP_4772 0.17 +1.4
5,433,491 + PP_4772 0.30 +1.0
5,433,531 + PP_4772 0.31 +1.7
5,433,531 + PP_4772 0.31 +0.3
5,433,532 - PP_4772 0.32 -3.3
5,433,532 - PP_4772 0.32 +1.5
5,433,532 - PP_4772 0.32 +1.5
5,433,532 - PP_4772 0.32 -4.3
5,434,093 - PP_4772 0.54 +0.3
5,434,139 + PP_4772 0.56 -3.5
5,434,140 - PP_4772 0.56 +1.3
5,434,248 + PP_4772 0.60 +0.8
5,434,474 + PP_4772 0.69 -2.7
5,434,547 + PP_4772 0.72 +0.1
5,434,840 + PP_4772 0.83 -0.3
5,435,105 + -1.5
5,435,105 + +0.1
5,435,256 + -0.0
5,435,289 + -1.1
5,435,290 - +1.5
5,435,290 - +1.6
5,435,313 + +1.3
5,435,313 + -0.2
5,435,314 - +0.8
5,435,314 - -1.5
5,435,324 + +0.0
5,435,324 + +0.5
5,435,324 + -0.2
5,435,377 + PP_4773 0.12 +0.7
5,435,377 + PP_4773 0.12 +1.9
5,435,378 - PP_4773 0.13 -2.1
5,435,378 - PP_4773 0.13 +1.8
5,435,462 - PP_4773 0.30 -1.1
5,435,539 + PP_4773 0.46 +0.1
5,435,539 + PP_4773 0.46 +0.5
5,435,540 - PP_4773 0.46 -0.5
5,435,540 - PP_4773 0.46 +0.3
5,435,540 - PP_4773 0.46 +0.7
5,435,593 + PP_4773 0.57 +0.3
5,435,594 - PP_4773 0.57 +0.9
5,435,596 + PP_4773 0.58 +1.5
5,435,830 + -2.3
5,435,830 + -4.2
5,435,831 - +1.2
5,436,014 + PP_4774 0.22 +0.1
5,436,015 - PP_4774 0.22 +0.6
5,436,146 + PP_4774 0.37 -2.4
5,436,147 - PP_4774 0.37 -0.4
5,436,147 - PP_4774 0.37 +0.4
5,436,169 + PP_4774 0.40 -2.4
5,436,169 + PP_4774 0.40 -0.5
5,436,170 - PP_4774 0.40 -1.2
5,436,170 - PP_4774 0.40 -2.1
5,436,170 - PP_4774 0.40 +1.0
5,436,236 + PP_4774 0.47 -0.8
5,436,236 + PP_4774 0.47 -0.4
5,436,236 + PP_4774 0.47 +0.6
5,436,236 + PP_4774 0.47 +1.1
5,436,237 - PP_4774 0.48 -0.9
5,436,237 - PP_4774 0.48 +1.3

Or see this region's nucleotide sequence