Strain Fitness in Pseudomonas putida KT2440 around PP_3282

Experiment: Growth at 25C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3280 and PP_3281 overlap by 8 nucleotidesPP_3281 and PP_3282 overlap by 8 nucleotidesPP_3282 and PP_3283 are separated by 2 nucleotidesPP_3283 and PP_3284 are separated by 34 nucleotides PP_3280: PP_3280 - 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase, at 3,714,635 to 3,715,855 _3280 PP_3281: PP_3281 - hydroxyphenylacetyl-CoA thioesterase, at 3,715,848 to 3,716,288 _3281 PP_3282: PP_3282 - 3-hydroxyadipyl-CoA dehydrogenase, at 3,716,281 to 3,717,798 _3282 PP_3283: PP_3283 - 1,2-epoxyphenylacetyl-CoA isomerase, at 3,717,801 to 3,718,592 _3283 PP_3284: PP_3284 - enoyl-CoA hydratase-isomerase, at 3,718,627 to 3,719,400 _3284 Position (kb) 3716 3717 3718Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3715.457 kb on - strand, within PP_3280at 3715.599 kb on - strand, within PP_3280at 3715.684 kb on + strand, within PP_3280at 3715.684 kb on + strand, within PP_3280at 3715.684 kb on + strand, within PP_3280at 3715.685 kb on - strand, within PP_3280at 3715.895 kb on - strand, within PP_3281at 3715.954 kb on + strand, within PP_3281at 3715.955 kb on - strand, within PP_3281at 3715.955 kb on - strand, within PP_3281at 3716.032 kb on + strand, within PP_3281at 3716.033 kb on - strand, within PP_3281at 3716.072 kb on - strand, within PP_3281at 3716.072 kb on - strand, within PP_3281at 3716.075 kb on + strand, within PP_3281at 3716.075 kb on + strand, within PP_3281at 3716.075 kb on + strand, within PP_3281at 3716.076 kb on - strand, within PP_3281at 3716.164 kb on - strand, within PP_3281at 3716.290 kb on + strandat 3716.290 kb on + strandat 3716.291 kb on - strandat 3716.291 kb on - strandat 3716.291 kb on - strandat 3716.291 kb on - strandat 3716.436 kb on - strand, within PP_3282at 3716.673 kb on - strand, within PP_3282at 3716.940 kb on - strand, within PP_3282at 3716.945 kb on + strand, within PP_3282at 3716.945 kb on + strand, within PP_3282at 3716.946 kb on - strand, within PP_3282at 3716.946 kb on - strand, within PP_3282at 3716.946 kb on - strand, within PP_3282at 3717.047 kb on - strand, within PP_3282at 3717.065 kb on + strand, within PP_3282at 3717.065 kb on + strand, within PP_3282at 3717.065 kb on + strand, within PP_3282at 3717.065 kb on + strand, within PP_3282at 3717.065 kb on + strand, within PP_3282at 3717.066 kb on - strand, within PP_3282at 3717.066 kb on - strand, within PP_3282at 3717.066 kb on - strand, within PP_3282at 3717.066 kb on - strand, within PP_3282at 3717.184 kb on + strand, within PP_3282at 3717.185 kb on - strand, within PP_3282at 3717.198 kb on - strand, within PP_3282at 3717.198 kb on - strandat 3717.238 kb on - strand, within PP_3282at 3717.284 kb on + strand, within PP_3282at 3717.285 kb on - strand, within PP_3282at 3717.285 kb on - strand, within PP_3282at 3717.372 kb on + strand, within PP_3282at 3717.435 kb on + strand, within PP_3282at 3717.435 kb on + strand, within PP_3282at 3717.436 kb on - strand, within PP_3282at 3717.451 kb on - strand, within PP_3282at 3717.451 kb on - strand, within PP_3282at 3717.451 kb on - strand, within PP_3282at 3717.451 kb on - strand, within PP_3282at 3717.610 kb on + strand, within PP_3282at 3717.692 kb on + strandat 3717.970 kb on + strand, within PP_3283at 3717.971 kb on - strand, within PP_3283at 3717.971 kb on - strand, within PP_3283at 3718.148 kb on + strand, within PP_3283at 3718.148 kb on + strand, within PP_3283at 3718.281 kb on + strand, within PP_3283at 3718.281 kb on + strand, within PP_3283at 3718.281 kb on + strand, within PP_3283at 3718.327 kb on + strand, within PP_3283at 3718.328 kb on - strand, within PP_3283at 3718.506 kb on - strand, within PP_3283at 3718.506 kb on - strand, within PP_3283

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C
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3,715,457 - PP_3280 0.67 +1.0
3,715,599 - PP_3280 0.79 -0.2
3,715,684 + PP_3280 0.86 -1.3
3,715,684 + PP_3280 0.86 -0.1
3,715,684 + PP_3280 0.86 +0.0
3,715,685 - PP_3280 0.86 +0.0
3,715,895 - PP_3281 0.11 +1.5
3,715,954 + PP_3281 0.24 +0.6
3,715,955 - PP_3281 0.24 -0.3
3,715,955 - PP_3281 0.24 +0.2
3,716,032 + PP_3281 0.42 +0.5
3,716,033 - PP_3281 0.42 +1.7
3,716,072 - PP_3281 0.51 +0.5
3,716,072 - PP_3281 0.51 +0.0
3,716,075 + PP_3281 0.51 -0.5
3,716,075 + PP_3281 0.51 -2.6
3,716,075 + PP_3281 0.51 +0.8
3,716,076 - PP_3281 0.52 -0.7
3,716,164 - PP_3281 0.72 -0.2
3,716,290 + -0.4
3,716,290 + -0.8
3,716,291 - +0.3
3,716,291 - -1.2
3,716,291 - +0.5
3,716,291 - +0.4
3,716,436 - PP_3282 0.10 +0.7
3,716,673 - PP_3282 0.26 -0.7
3,716,940 - PP_3282 0.43 -0.4
3,716,945 + PP_3282 0.44 +0.9
3,716,945 + PP_3282 0.44 +1.1
3,716,946 - PP_3282 0.44 +1.6
3,716,946 - PP_3282 0.44 +0.3
3,716,946 - PP_3282 0.44 -4.2
3,717,047 - PP_3282 0.50 +0.6
3,717,065 + PP_3282 0.52 +0.4
3,717,065 + PP_3282 0.52 -2.6
3,717,065 + PP_3282 0.52 -3.6
3,717,065 + PP_3282 0.52 +1.2
3,717,065 + PP_3282 0.52 +1.0
3,717,066 - PP_3282 0.52 -0.6
3,717,066 - PP_3282 0.52 +0.6
3,717,066 - PP_3282 0.52 -0.4
3,717,066 - PP_3282 0.52 -0.2
3,717,184 + PP_3282 0.59 +0.8
3,717,185 - PP_3282 0.60 +1.4
3,717,198 - PP_3282 0.60 +0.1
3,717,198 - -2.0
3,717,238 - PP_3282 0.63 -0.7
3,717,284 + PP_3282 0.66 -0.6
3,717,285 - PP_3282 0.66 +1.6
3,717,285 - PP_3282 0.66 +1.6
3,717,372 + PP_3282 0.72 +0.3
3,717,435 + PP_3282 0.76 +1.5
3,717,435 + PP_3282 0.76 -0.1
3,717,436 - PP_3282 0.76 +1.1
3,717,451 - PP_3282 0.77 +1.3
3,717,451 - PP_3282 0.77 +1.7
3,717,451 - PP_3282 0.77 +0.0
3,717,451 - PP_3282 0.77 +1.8
3,717,610 + PP_3282 0.88 +1.0
3,717,692 + -3.7
3,717,970 + PP_3283 0.21 -0.5
3,717,971 - PP_3283 0.21 -0.2
3,717,971 - PP_3283 0.21 +0.8
3,718,148 + PP_3283 0.44 +0.8
3,718,148 + PP_3283 0.44 +0.3
3,718,281 + PP_3283 0.61 +0.3
3,718,281 + PP_3283 0.61 +0.8
3,718,281 + PP_3283 0.61 -4.0
3,718,327 + PP_3283 0.66 +1.4
3,718,328 - PP_3283 0.67 +1.1
3,718,506 - PP_3283 0.89 +0.4
3,718,506 - PP_3283 0.89 +1.0

Or see this region's nucleotide sequence