Strain Fitness in Pseudomonas putida KT2440 around PP_2481

Experiment: Growth at 25C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2480 and PP_2481 are separated by 28 nucleotidesPP_2481 and PP_2482 overlap by 4 nucleotidesPP_2482 and PP_2483 overlap by 23 nucleotides PP_2480: PP_2480 - putative Xanthine dehydrogenase accessory factor, at 2,827,825 to 2,829,033 _2480 PP_2481: PP_2481 - conserved protein of unknown function, at 2,829,062 to 2,829,400 _2481 PP_2482: PP_2482 - putative Molybdenum cofactor biosynthesis protein A, at 2,829,397 to 2,830,365 _2482 PP_2483: PP_2483 - conserved protein of unknown function, at 2,830,343 to 2,830,942 _2483 Position (kb) 2829 2830Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2828.262 kb on - strand, within PP_2480at 2828.262 kb on - strand, within PP_2480at 2828.597 kb on + strand, within PP_2480at 2828.597 kb on + strand, within PP_2480at 2828.597 kb on + strand, within PP_2480at 2828.685 kb on - strand, within PP_2480at 2828.713 kb on + strand, within PP_2480at 2828.713 kb on + strand, within PP_2480at 2828.713 kb on + strand, within PP_2480at 2828.713 kb on + strand, within PP_2480at 2828.713 kb on + strand, within PP_2480at 2828.714 kb on - strand, within PP_2480at 2829.040 kb on - strandat 2829.075 kb on + strandat 2829.076 kb on - strandat 2829.084 kb on + strandat 2829.085 kb on - strandat 2829.090 kb on + strandat 2829.182 kb on + strand, within PP_2481at 2829.182 kb on + strand, within PP_2481at 2829.182 kb on + strand, within PP_2481at 2829.183 kb on - strand, within PP_2481at 2829.183 kb on - strand, within PP_2481at 2829.183 kb on - strand, within PP_2481at 2829.183 kb on - strand, within PP_2481at 2829.183 kb on - strand, within PP_2481at 2829.199 kb on + strand, within PP_2481at 2829.199 kb on + strand, within PP_2481at 2829.200 kb on - strand, within PP_2481at 2829.200 kb on - strand, within PP_2481at 2829.281 kb on + strand, within PP_2481at 2829.281 kb on + strand, within PP_2481at 2829.281 kb on + strand, within PP_2481at 2829.281 kb on + strand, within PP_2481at 2829.282 kb on - strand, within PP_2481at 2829.282 kb on - strand, within PP_2481at 2829.332 kb on + strand, within PP_2481at 2829.333 kb on - strand, within PP_2481at 2829.401 kb on + strandat 2829.475 kb on + strandat 2829.476 kb on - strandat 2829.476 kb on - strandat 2829.476 kb on - strandat 2829.644 kb on + strand, within PP_2482at 2829.644 kb on + strand, within PP_2482at 2829.644 kb on + strand, within PP_2482at 2829.644 kb on + strand, within PP_2482at 2829.645 kb on - strand, within PP_2482at 2829.645 kb on - strand, within PP_2482at 2829.645 kb on - strand, within PP_2482at 2829.645 kb on - strand, within PP_2482at 2829.649 kb on - strand, within PP_2482at 2829.649 kb on - strand, within PP_2482at 2829.669 kb on + strand, within PP_2482at 2829.882 kb on + strand, within PP_2482at 2829.882 kb on + strand, within PP_2482at 2829.935 kb on - strand, within PP_2482at 2829.958 kb on - strand, within PP_2482at 2829.958 kb on - strand, within PP_2482at 2829.999 kb on + strand, within PP_2482at 2830.097 kb on - strand, within PP_2482at 2830.099 kb on - strand, within PP_2482at 2830.099 kb on - strand, within PP_2482at 2830.197 kb on - strand, within PP_2482at 2830.198 kb on + strand, within PP_2482at 2830.198 kb on + strand, within PP_2482at 2830.198 kb on + strand, within PP_2482at 2830.198 kb on + strand, within PP_2482at 2830.199 kb on - strand, within PP_2482at 2830.320 kb on + strandat 2830.320 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C
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2,828,262 - PP_2480 0.36 +0.2
2,828,262 - PP_2480 0.36 +0.4
2,828,597 + PP_2480 0.64 +0.4
2,828,597 + PP_2480 0.64 +0.2
2,828,597 + PP_2480 0.64 -0.1
2,828,685 - PP_2480 0.71 +0.7
2,828,713 + PP_2480 0.73 -3.8
2,828,713 + PP_2480 0.73 +0.3
2,828,713 + PP_2480 0.73 -0.8
2,828,713 + PP_2480 0.73 -2.0
2,828,713 + PP_2480 0.73 -2.3
2,828,714 - PP_2480 0.74 +0.7
2,829,040 - -1.0
2,829,075 + -3.2
2,829,076 - -0.3
2,829,084 + +3.6
2,829,085 - -3.4
2,829,090 + +0.5
2,829,182 + PP_2481 0.35 +1.4
2,829,182 + PP_2481 0.35 +1.3
2,829,182 + PP_2481 0.35 +2.3
2,829,183 - PP_2481 0.36 -1.0
2,829,183 - PP_2481 0.36 +0.1
2,829,183 - PP_2481 0.36 +0.3
2,829,183 - PP_2481 0.36 +1.3
2,829,183 - PP_2481 0.36 +0.8
2,829,199 + PP_2481 0.40 +0.9
2,829,199 + PP_2481 0.40 +1.9
2,829,200 - PP_2481 0.41 -5.2
2,829,200 - PP_2481 0.41 +0.7
2,829,281 + PP_2481 0.65 -3.3
2,829,281 + PP_2481 0.65 +0.1
2,829,281 + PP_2481 0.65 +0.9
2,829,281 + PP_2481 0.65 -1.1
2,829,282 - PP_2481 0.65 +0.5
2,829,282 - PP_2481 0.65 -4.0
2,829,332 + PP_2481 0.80 +0.2
2,829,333 - PP_2481 0.80 -2.3
2,829,401 + +0.2
2,829,475 + -0.4
2,829,476 - -0.1
2,829,476 - -3.8
2,829,476 - -1.1
2,829,644 + PP_2482 0.25 -0.8
2,829,644 + PP_2482 0.25 +0.1
2,829,644 + PP_2482 0.25 +0.8
2,829,644 + PP_2482 0.25 +1.1
2,829,645 - PP_2482 0.26 +0.5
2,829,645 - PP_2482 0.26 -1.8
2,829,645 - PP_2482 0.26 +0.4
2,829,645 - PP_2482 0.26 -2.6
2,829,649 - PP_2482 0.26 +1.2
2,829,649 - PP_2482 0.26 +1.6
2,829,669 + PP_2482 0.28 -3.9
2,829,882 + PP_2482 0.50 -0.0
2,829,882 + PP_2482 0.50 +0.4
2,829,935 - PP_2482 0.56 -2.1
2,829,958 - PP_2482 0.58 +1.8
2,829,958 - PP_2482 0.58 -1.3
2,829,999 + PP_2482 0.62 -3.1
2,830,097 - PP_2482 0.72 -0.9
2,830,099 - PP_2482 0.72 -0.4
2,830,099 - PP_2482 0.72 +1.9
2,830,197 - PP_2482 0.83 -0.5
2,830,198 + PP_2482 0.83 +0.5
2,830,198 + PP_2482 0.83 +0.9
2,830,198 + PP_2482 0.83 -1.1
2,830,198 + PP_2482 0.83 +0.6
2,830,199 - PP_2482 0.83 -4.1
2,830,320 + +0.2
2,830,320 + +0.4

Or see this region's nucleotide sequence