Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03290 and PS417_03295 are separated by 148 nucleotides PS417_03295 and PS417_03300 overlap by 8 nucleotides PS417_03300 and PS417_03305 are separated by 120 nucleotides PS417_03305 and PS417_03310 are separated by 139 nucleotides
PS417_03290: PS417_03290 - hypothetical protein, at 754,917 to 756,194
_03290
PS417_03295: PS417_03295 - energy transducer TonB, at 756,343 to 757,128
_03295
PS417_03300: PS417_03300 - alanine acetyltransferase, at 757,121 to 757,573
_03300
PS417_03305: PS417_03305 - HPr, at 757,694 to 758,098
_03305
PS417_03310: PS417_03310 - carbonate dehydratase, at 758,238 to 758,882
_03310
Position (kb) 757
758 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 756.145 kb on - strand at 756.145 kb on - strand at 756.145 kb on - strand at 756.219 kb on + strand at 756.219 kb on + strand at 756.219 kb on + strand at 756.220 kb on - strand at 756.234 kb on + strand at 756.235 kb on - strand at 756.323 kb on + strand at 757.134 kb on + strand at 757.245 kb on - strand, within PS417_03300 at 757.338 kb on + strand, within PS417_03300 at 757.469 kb on + strand, within PS417_03300 at 757.470 kb on - strand, within PS417_03300 at 757.512 kb on - strand, within PS417_03300 at 757.512 kb on - strand, within PS417_03300 at 757.515 kb on - strand, within PS417_03300 at 758.123 kb on + strand at 758.125 kb on + strand at 758.125 kb on + strand at 758.125 kb on + strand at 758.126 kb on - strand at 758.126 kb on - strand at 758.126 kb on - strand at 758.248 kb on + strand at 758.248 kb on + strand at 758.347 kb on - strand, within PS417_03310 at 758.347 kb on - strand, within PS417_03310 at 758.532 kb on + strand, within PS417_03310
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 756,145 - -0.6 756,145 - -1.0 756,145 - +1.0 756,219 + +0.8 756,219 + +0.8 756,219 + -0.3 756,220 - -0.1 756,234 + +1.5 756,235 - -0.0 756,323 + +0.7 757,134 + +0.1 757,245 - PS417_03300 0.27 -0.2 757,338 + PS417_03300 0.48 -1.5 757,469 + PS417_03300 0.77 -1.2 757,470 - PS417_03300 0.77 -1.2 757,512 - PS417_03300 0.86 -0.8 757,512 - PS417_03300 0.86 -1.2 757,515 - PS417_03300 0.87 +0.8 758,123 + +1.5 758,125 + +0.1 758,125 + -0.2 758,125 + +1.0 758,126 - -0.6 758,126 - -0.3 758,126 - -0.4 758,248 + -1.1 758,248 + -2.4 758,347 - PS417_03310 0.17 -0.9 758,347 - PS417_03310 0.17 -2.8 758,532 + PS417_03310 0.46 -4.1
Or see this region's nucleotide sequence