Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02985 and PS417_02990 are separated by 298 nucleotides PS417_02990 and PS417_02995 are separated by 2 nucleotides PS417_02995 and PS417_03000 are separated by 182 nucleotides
PS417_02985: PS417_02985 - diguanylate cyclase, at 682,518 to 684,188
_02985
PS417_02990: PS417_02990 - hypothetical protein, at 684,487 to 685,554
_02990
PS417_02995: PS417_02995 - NUDIX hydrolase, at 685,557 to 686,093
_02995
PS417_03000: PS417_03000 - translation initiation factor Sui1, at 686,276 to 686,647
_03000
Position (kb) 684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 683.812 kb on + strand, within PS417_02985 at 683.812 kb on + strand, within PS417_02985 at 684.198 kb on - strand at 684.200 kb on + strand at 684.201 kb on - strand at 684.201 kb on - strand at 684.201 kb on - strand at 684.236 kb on - strand at 684.270 kb on + strand at 684.271 kb on - strand at 684.271 kb on - strand at 684.279 kb on - strand at 684.346 kb on + strand at 684.347 kb on - strand at 684.348 kb on + strand at 684.349 kb on - strand at 684.560 kb on - strand at 684.610 kb on + strand, within PS417_02990 at 684.727 kb on + strand, within PS417_02990 at 684.728 kb on - strand, within PS417_02990 at 684.729 kb on + strand, within PS417_02990 at 685.081 kb on + strand, within PS417_02990 at 685.283 kb on - strand, within PS417_02990 at 685.496 kb on - strand at 685.496 kb on - strand at 685.702 kb on + strand, within PS417_02995 at 685.703 kb on - strand, within PS417_02995 at 685.819 kb on - strand, within PS417_02995 at 685.897 kb on - strand, within PS417_02995 at 685.928 kb on + strand, within PS417_02995 at 685.928 kb on + strand, within PS417_02995 at 685.929 kb on - strand, within PS417_02995 at 685.999 kb on + strand, within PS417_02995 at 685.999 kb on + strand, within PS417_02995 at 686.040 kb on + strand at 686.041 kb on - strand at 686.041 kb on - strand at 686.102 kb on - strand at 686.102 kb on - strand at 686.124 kb on - strand at 686.145 kb on + strand at 686.320 kb on - strand, within PS417_03000 at 686.320 kb on - strand, within PS417_03000 at 686.378 kb on - strand, within PS417_03000 at 686.378 kb on - strand, within PS417_03000
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 683,812 + PS417_02985 0.77 -0.4 683,812 + PS417_02985 0.77 +0.6 684,198 - -0.1 684,200 + +1.1 684,201 - -3.0 684,201 - +0.2 684,201 - +0.1 684,236 - +0.1 684,270 + -0.1 684,271 - +0.3 684,271 - -0.5 684,279 - -0.5 684,346 + -0.7 684,347 - +0.1 684,348 + -0.3 684,349 - +0.5 684,560 - -0.1 684,610 + PS417_02990 0.12 -1.9 684,727 + PS417_02990 0.22 +0.1 684,728 - PS417_02990 0.23 -1.7 684,729 + PS417_02990 0.23 -1.4 685,081 + PS417_02990 0.56 -1.0 685,283 - PS417_02990 0.75 +0.2 685,496 - +0.5 685,496 - -0.5 685,702 + PS417_02995 0.27 +0.1 685,703 - PS417_02995 0.27 -1.9 685,819 - PS417_02995 0.49 -0.1 685,897 - PS417_02995 0.63 -1.5 685,928 + PS417_02995 0.69 -0.9 685,928 + PS417_02995 0.69 -0.2 685,929 - PS417_02995 0.69 -0.2 685,999 + PS417_02995 0.82 +1.5 685,999 + PS417_02995 0.82 -0.4 686,040 + -1.1 686,041 - -0.2 686,041 - +0.2 686,102 - -1.7 686,102 - -0.0 686,124 - +0.5 686,145 + -0.0 686,320 - PS417_03000 0.12 -0.9 686,320 - PS417_03000 0.12 -0.8 686,378 - PS417_03000 0.27 -0.2 686,378 - PS417_03000 0.27 +0.4
Or see this region's nucleotide sequence