Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02755 and PS417_02760 are separated by 97 nucleotides PS417_02760 and PS417_02765 are separated by 71 nucleotides PS417_02765 and PS417_02770 are separated by 193 nucleotides
PS417_02755: PS417_02755 - membrane protein, at 627,276 to 628,145
_02755
PS417_02760: PS417_02760 - AraC family transcriptional regulator, at 628,243 to 629,031
_02760
PS417_02765: PS417_02765 - phosphate starvation-inducible protein PsiF, at 629,103 to 629,405
_02765
PS417_02770: PS417_02770 - membrane protein, at 629,599 to 630,612
_02770
Position (kb) 629
630 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 628.138 kb on + strand at 628.138 kb on + strand at 628.138 kb on + strand at 628.138 kb on + strand at 628.139 kb on - strand at 628.203 kb on - strand at 628.205 kb on - strand at 628.242 kb on + strand at 628.243 kb on - strand at 628.259 kb on + strand at 628.260 kb on - strand at 628.260 kb on - strand at 628.297 kb on + strand at 628.471 kb on + strand, within PS417_02760 at 628.471 kb on + strand, within PS417_02760 at 628.471 kb on + strand, within PS417_02760 at 628.471 kb on + strand, within PS417_02760 at 628.472 kb on - strand, within PS417_02760 at 628.472 kb on - strand, within PS417_02760 at 628.492 kb on + strand, within PS417_02760 at 628.492 kb on + strand, within PS417_02760 at 628.493 kb on - strand, within PS417_02760 at 629.037 kb on + strand at 629.038 kb on - strand at 629.051 kb on + strand at 629.051 kb on + strand at 629.051 kb on + strand at 629.052 kb on - strand at 629.183 kb on + strand, within PS417_02765 at 629.599 kb on - strand at 629.599 kb on - strand at 629.627 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.642 kb on - strand at 629.642 kb on - strand at 629.642 kb on - strand at 629.822 kb on + strand, within PS417_02770 at 629.823 kb on - strand, within PS417_02770
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 628,138 + +0.7 628,138 + -0.5 628,138 + +0.0 628,138 + -0.7 628,139 - +0.2 628,203 - +0.2 628,205 - -0.2 628,242 + +1.2 628,243 - +0.3 628,259 + +0.2 628,260 - +3.8 628,260 - -0.3 628,297 + -0.1 628,471 + PS417_02760 0.29 +0.1 628,471 + PS417_02760 0.29 -0.1 628,471 + PS417_02760 0.29 +0.8 628,471 + PS417_02760 0.29 +0.9 628,472 - PS417_02760 0.29 -0.6 628,472 - PS417_02760 0.29 -0.9 628,492 + PS417_02760 0.32 +0.1 628,492 + PS417_02760 0.32 +2.1 628,493 - PS417_02760 0.32 +0.1 629,037 + -0.2 629,038 - +0.7 629,051 + -0.7 629,051 + +0.4 629,051 + +0.1 629,052 - -0.5 629,183 + PS417_02765 0.26 -0.2 629,599 - -1.1 629,599 - -0.6 629,627 + -0.1 629,641 + -0.6 629,641 + -0.2 629,641 + +0.1 629,641 + -0.2 629,641 + +0.0 629,641 + +0.9 629,641 + -0.6 629,642 - -0.8 629,642 - +0.2 629,642 - -1.2 629,822 + PS417_02770 0.22 -0.2 629,823 - PS417_02770 0.22 -0.4
Or see this region's nucleotide sequence