Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25285 and PS417_25290 overlap by 4 nucleotides PS417_25290 and PS417_25295 are separated by 130 nucleotides PS417_25295 and PS417_25300 are separated by 138 nucleotides PS417_25300 and PS417_25305 are separated by 1 nucleotides
PS417_25285: PS417_25285 - thioredoxin, at 5,476,265 to 5,477,137
_25285
PS417_25290: PS417_25290 - hypothetical protein, at 5,477,134 to 5,477,481
_25290
PS417_25295: PS417_25295 - hypothetical protein, at 5,477,612 to 5,478,214
_25295
PS417_25300: PS417_25300 - methionine ABC transporter ATP-binding protein, at 5,478,353 to 5,479,063
_25300
PS417_25305: PS417_25305 - peptide ABC transporter permease, at 5,479,065 to 5,480,330
_25305
Position (kb) 5477
5478
5479 Strain fitness (log2 ratio) -1
0
1 at 5476.718 kb on - strand, within PS417_25285 at 5476.941 kb on - strand, within PS417_25285 at 5477.027 kb on + strand, within PS417_25285 at 5477.118 kb on + strand at 5477.118 kb on + strand at 5477.119 kb on - strand at 5477.132 kb on + strand at 5477.135 kb on + strand at 5477.153 kb on + strand at 5477.153 kb on + strand at 5477.323 kb on + strand, within PS417_25290 at 5477.324 kb on - strand, within PS417_25290 at 5477.324 kb on - strand, within PS417_25290 at 5477.489 kb on - strand at 5477.572 kb on - strand at 5477.894 kb on - strand, within PS417_25295 at 5477.894 kb on - strand, within PS417_25295 at 5478.054 kb on - strand, within PS417_25295 at 5479.068 kb on + strand at 5479.068 kb on + strand at 5479.068 kb on + strand at 5479.069 kb on - strand at 5479.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,476,718 - PS417_25285 0.52 -0.1 5,476,941 - PS417_25285 0.77 -0.3 5,477,027 + PS417_25285 0.87 -0.5 5,477,118 + -0.8 5,477,118 + -0.2 5,477,119 - -0.1 5,477,132 + +0.3 5,477,135 + -0.6 5,477,153 + +0.2 5,477,153 + +0.2 5,477,323 + PS417_25290 0.54 -0.4 5,477,324 - PS417_25290 0.55 +0.1 5,477,324 - PS417_25290 0.55 +0.5 5,477,489 - +0.4 5,477,572 - -0.1 5,477,894 - PS417_25295 0.47 -1.5 5,477,894 - PS417_25295 0.47 -0.8 5,478,054 - PS417_25295 0.73 -0.0 5,479,068 + -0.1 5,479,068 + -0.1 5,479,068 + -1.2 5,479,069 - +0.1 5,479,069 - -0.4
Or see this region's nucleotide sequence