Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24520 and PS417_24525 are separated by 25 nucleotides PS417_24525 and PS417_24530 are separated by 117 nucleotides PS417_24530 and PS417_24535 are separated by 176 nucleotides PS417_24535 and PS417_24540 are separated by 40 nucleotides
PS417_24520: PS417_24520 - DNA polymerase III subunit epsilon, at 5,320,952 to 5,321,563
_24520
PS417_24525: PS417_24525 - nuclease, at 5,321,589 to 5,322,065
_24525
PS417_24530: PS417_24530 - ABC transporter substrate-binding protein, at 5,322,183 to 5,322,914
_24530
PS417_24535: PS417_24535 - membrane protein, at 5,323,091 to 5,323,750
_24535
PS417_24540: PS417_24540 - endonuclease, at 5,323,791 to 5,324,879
_24540
Position (kb) 5322
5323 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5321.265 kb on + strand, within PS417_24520 at 5321.265 kb on + strand, within PS417_24520 at 5321.265 kb on + strand, within PS417_24520 at 5321.266 kb on - strand, within PS417_24520 at 5321.554 kb on + strand at 5321.554 kb on + strand at 5321.554 kb on + strand at 5321.555 kb on - strand at 5321.555 kb on - strand at 5321.555 kb on - strand at 5321.555 kb on - strand at 5321.590 kb on + strand at 5321.595 kb on - strand at 5321.674 kb on + strand, within PS417_24525 at 5321.845 kb on + strand, within PS417_24525 at 5321.846 kb on - strand, within PS417_24525 at 5321.929 kb on + strand, within PS417_24525 at 5321.936 kb on - strand, within PS417_24525 at 5322.022 kb on + strand at 5322.022 kb on + strand at 5322.023 kb on - strand at 5322.026 kb on - strand at 5322.496 kb on + strand, within PS417_24530 at 5322.497 kb on - strand, within PS417_24530 at 5322.497 kb on - strand, within PS417_24530 at 5322.717 kb on - strand, within PS417_24530 at 5322.775 kb on + strand, within PS417_24530 at 5322.775 kb on + strand, within PS417_24530 at 5322.775 kb on + strand, within PS417_24530 at 5322.776 kb on - strand, within PS417_24530 at 5322.776 kb on - strand, within PS417_24530 at 5322.776 kb on - strand, within PS417_24530 at 5322.974 kb on + strand at 5322.974 kb on + strand at 5322.975 kb on - strand at 5322.975 kb on - strand at 5323.022 kb on + strand at 5323.023 kb on - strand at 5323.023 kb on - strand at 5323.032 kb on + strand at 5323.033 kb on - strand at 5323.073 kb on - strand at 5323.278 kb on - strand, within PS417_24535 at 5323.337 kb on - strand, within PS417_24535 at 5323.478 kb on + strand, within PS417_24535 at 5323.751 kb on + strand at 5323.780 kb on - strand at 5323.802 kb on - strand at 5323.861 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 5,321,265 + PS417_24520 0.51 -0.3 5,321,265 + PS417_24520 0.51 +0.4 5,321,265 + PS417_24520 0.51 -0.4 5,321,266 - PS417_24520 0.51 +0.7 5,321,554 + +0.1 5,321,554 + -0.1 5,321,554 + +0.9 5,321,555 - +0.1 5,321,555 - +0.2 5,321,555 - +0.1 5,321,555 - -0.3 5,321,590 + +0.6 5,321,595 - +0.1 5,321,674 + PS417_24525 0.18 -0.2 5,321,845 + PS417_24525 0.54 +0.8 5,321,846 - PS417_24525 0.54 -0.5 5,321,929 + PS417_24525 0.71 -0.9 5,321,936 - PS417_24525 0.73 -1.0 5,322,022 + +0.1 5,322,022 + -0.3 5,322,023 - +0.9 5,322,026 - -0.1 5,322,496 + PS417_24530 0.43 -4.8 5,322,497 - PS417_24530 0.43 -1.6 5,322,497 - PS417_24530 0.43 -1.1 5,322,717 - PS417_24530 0.73 -1.7 5,322,775 + PS417_24530 0.81 -2.6 5,322,775 + PS417_24530 0.81 -0.8 5,322,775 + PS417_24530 0.81 -1.2 5,322,776 - PS417_24530 0.81 -1.9 5,322,776 - PS417_24530 0.81 -2.2 5,322,776 - PS417_24530 0.81 -1.2 5,322,974 + -2.4 5,322,974 + +0.5 5,322,975 - -0.2 5,322,975 - -0.6 5,323,022 + -0.4 5,323,023 - -0.2 5,323,023 - +0.7 5,323,032 + -0.3 5,323,033 - -0.4 5,323,073 - -1.1 5,323,278 - PS417_24535 0.28 -0.1 5,323,337 - PS417_24535 0.37 -0.8 5,323,478 + PS417_24535 0.59 -0.4 5,323,751 + -0.3 5,323,780 - -0.1 5,323,802 - +0.5 5,323,861 - -0.3
Or see this region's nucleotide sequence