Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22850 and PS417_22855 are separated by 137 nucleotides PS417_22855 and PS417_22860 are separated by 60 nucleotides PS417_22860 and PS417_22865 are separated by 136 nucleotides
PS417_22850: PS417_22850 - virulence factor family protein, at 4,951,748 to 4,953,022
_22850
PS417_22855: PS417_22855 - ssDNA exonuclease RecJ, at 4,953,160 to 4,954,869
_22855
PS417_22860: PS417_22860 - hypothetical protein, at 4,954,930 to 4,955,472
_22860
PS417_22865: PS417_22865 - CoA-transferase, at 4,955,609 to 4,956,802
_22865
Position (kb) 4953
4954
4955 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4952.561 kb on + strand, within PS417_22850 at 4952.696 kb on + strand, within PS417_22850 at 4952.696 kb on + strand, within PS417_22850 at 4952.696 kb on + strand, within PS417_22850 at 4952.697 kb on - strand, within PS417_22850 at 4952.697 kb on - strand, within PS417_22850 at 4952.697 kb on - strand, within PS417_22850 at 4952.741 kb on - strand, within PS417_22850 at 4952.741 kb on - strand, within PS417_22850 at 4952.741 kb on - strand, within PS417_22850 at 4952.784 kb on + strand, within PS417_22850 at 4953.025 kb on + strand at 4953.233 kb on + strand at 4953.752 kb on + strand, within PS417_22855 at 4953.752 kb on + strand, within PS417_22855 at 4954.033 kb on - strand, within PS417_22855 at 4954.057 kb on - strand, within PS417_22855 at 4954.178 kb on - strand, within PS417_22855 at 4954.292 kb on + strand, within PS417_22855 at 4954.293 kb on - strand, within PS417_22855 at 4954.569 kb on - strand, within PS417_22855 at 4954.656 kb on + strand, within PS417_22855 at 4955.017 kb on + strand, within PS417_22860 at 4955.017 kb on + strand, within PS417_22860 at 4955.017 kb on + strand, within PS417_22860 at 4955.018 kb on - strand, within PS417_22860 at 4955.093 kb on - strand, within PS417_22860 at 4955.169 kb on + strand, within PS417_22860 at 4955.282 kb on - strand, within PS417_22860 at 4955.282 kb on - strand, within PS417_22860 at 4955.321 kb on + strand, within PS417_22860 at 4955.322 kb on - strand, within PS417_22860 at 4955.333 kb on + strand, within PS417_22860 at 4955.409 kb on - strand, within PS417_22860 at 4955.409 kb on - strand, within PS417_22860 at 4955.563 kb on - strand at 4955.563 kb on - strand at 4955.567 kb on + strand at 4955.771 kb on + strand, within PS417_22865 at 4955.771 kb on + strand, within PS417_22865 at 4955.772 kb on - strand, within PS417_22865 at 4955.772 kb on - strand, within PS417_22865
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 4,952,561 + PS417_22850 0.64 -3.0 4,952,696 + PS417_22850 0.74 -0.4 4,952,696 + PS417_22850 0.74 -3.9 4,952,696 + PS417_22850 0.74 -3.0 4,952,697 - PS417_22850 0.74 -3.5 4,952,697 - PS417_22850 0.74 -0.4 4,952,697 - PS417_22850 0.74 -4.7 4,952,741 - PS417_22850 0.78 -4.5 4,952,741 - PS417_22850 0.78 -4.2 4,952,741 - PS417_22850 0.78 -3.4 4,952,784 + PS417_22850 0.81 -2.4 4,953,025 + +0.1 4,953,233 + +0.4 4,953,752 + PS417_22855 0.35 +0.2 4,953,752 + PS417_22855 0.35 +1.7 4,954,033 - PS417_22855 0.51 -0.4 4,954,057 - PS417_22855 0.52 +0.4 4,954,178 - PS417_22855 0.60 +1.0 4,954,292 + PS417_22855 0.66 +1.0 4,954,293 - PS417_22855 0.66 -0.4 4,954,569 - PS417_22855 0.82 +0.2 4,954,656 + PS417_22855 0.87 -0.4 4,955,017 + PS417_22860 0.16 -0.4 4,955,017 + PS417_22860 0.16 -0.4 4,955,017 + PS417_22860 0.16 +0.5 4,955,018 - PS417_22860 0.16 +0.4 4,955,093 - PS417_22860 0.30 -0.2 4,955,169 + PS417_22860 0.44 +0.2 4,955,282 - PS417_22860 0.65 -0.5 4,955,282 - PS417_22860 0.65 +0.3 4,955,321 + PS417_22860 0.72 +0.1 4,955,322 - PS417_22860 0.72 -0.1 4,955,333 + PS417_22860 0.74 -0.1 4,955,409 - PS417_22860 0.88 +1.3 4,955,409 - PS417_22860 0.88 -0.2 4,955,563 - +1.4 4,955,563 - -0.0 4,955,567 + -0.2 4,955,771 + PS417_22865 0.14 +1.1 4,955,771 + PS417_22865 0.14 -0.3 4,955,772 - PS417_22865 0.14 +0.3 4,955,772 - PS417_22865 0.14 -0.2
Or see this region's nucleotide sequence